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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatattccgttttgatcattttttttttttttatcaattgttacataagttattacataaccaatcctttgctctcgtttcaattcctcgtcaagaatctaatttcttgttccaccagaagaattatgttggaaaaagcctattaaaaacattttaatgcctatgcagATTTACTCTGAAATGATCGGAAACGTCATGATTGATGCAAGGTCGACTGGAAAGTACTATCATT

Basic information

species Arabidopsis thaliana
transcript AT1G12000.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124873427|gb|EH955072.1|EH955072
EST:     TGAAATGCAAAGAGGTTCCTACTAGTTTTGGGTTTGATACAGCTTGCAAG                         ATTTACTCTGAAATGATCGGAAACGTCATGATTGAT
genomic: TGAAATGCAAAGAGGTTCCTACTAGTTTTGGGTTTGATACAGCTTGCAAGgtgatattcc ... gcctatgcagATTTACTCTGAAATGATCGGAAACGTCATGATTGAT
EST: gi|116438054|gb|EG480646.1|EG480646
EST:     TGAAATGCAAAGAGGTTCCTACTAGTTTTGGGTTTGATACAGCTTGCAAG                         ATTTACTCTGAAATGATCGGAAACGTCATGATTGATGCAAGGTCGACTGGA
genomic: TGAAATGCAAAGAGGTTCCTACTAGTTTTGGGTTTGATACAGCTTGCAAGgtgatattcc ... gcctatgcagATTTACTCTGAAATGATCGGAAACGTCATGATTGATGCAAGGTCGACTGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

accagaagaattatgttggaaaaagcctattaaaaacattttaatgcctatgcagATTTACTCTGAAATGATCGGAAACGTCATGATTGATGCAAGGTCGACTGGAAAGTACTATCATT
                                      ttttaat  putative branch site (score: 3)
                           tattaaaaacatttta  TA-rich tract