Sequence
atgc intronic sequence ATGC exonic sequencegtctctttttgttctcttacacatgtcttgtgttcctttttagctggccaagtcttctgtgatggtccgtctctgtttatttacagtcttgattttttttttctcttttttcagGAGTAACAATTTGGCTTCTCGCCGTTATTTACTTCATATCGGGTGTTCCAGGAGGCTATGTGTTATGGTATCGGCCTCTCTACCGTGCCTTCAG
Basic information
species | Arabidopsis thaliana |
transcript | AT1G11180.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G11180.2 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: LOC_Os01g57220.2 (Oryza sativa), 3'ss of exon 6
gtctctttttgttctcttacacatgtcttgtgttcctttttagctggccaagtcttctgtgatggtccgtctctgtttatttacagtcttgattttttttttctcttttttcagGAGTAACAATTTGGCTTCTCGCCGTTATTTACTTCATATCGGGTGTTCCAGGAGGCTATGTGTTATGGTATCGGCCTCTCTACCGTGCCTTCAG
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----------------gtatggctgact-gagtaccttactatatatttatcttatggatcagctgccatctgcactgacacttcaaactaatcctgcggttcaattcaat-agGTGTTATGATCTGGTTGCTAGCCATTATCTACTTTATATCTGGTGTACCTGGAGCCTATGTGTTATGGTATCGCCCCCTTTACAATGCGATGAG
upper sequence: AT1G11180.2 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GRMZM2G100809_T01 (Zea mays), 3'ss of exon 6
----gtctctttttgttctctta-cacatgtcttgtgttcctttttagctggccaagtcttctgtgatggtccgtctctgtttatttacagtcttgattttttttttctcttttttcagGAGTAACAATTTGGCTTCTCGCCGTTATTTACTTCATATCGGGTGTTCCAGGAGGCTATGTGTTATGGTATCGGCCTCTCTACCGTGCCTTCAG
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gtacaactaatcgtgttttattgtcacatcctccatcttcttccatagca---catgttacct-tactgacacttcaattttaaacta--------atatgacctatctacttcaaaagGTGTTATGATCTGGCTGCTTGCCATTATCTACTTCATATCTGGTGTGCCCGGGGCTTATGTGTTATGGTATCGGCCTCTTTATAATGCAATGAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|301501643|gb|HO207183.1|HO207183EST: ACTTTTCTGGAATATCATCGCCGTTACTACCGCTTGGATCAAAGGAAAAG GAGTAACAATTTGGCTTCTCGCCGTTATTTACTTCATATCGGGTGGTTCCA
genomic: ACTTTTCTGGAATATCATCGCCGTTACTACCGCTTGGATCAAAGGAGAAGgtctcttttt ... cttttttcagGAGTAACAATTTGGCTTCTCGCCGTTATTTACTTCATATCGGGTG-TTCCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgatggtccgtctctgtttatttacagtcttgattttttttttctcttttttcagGAGTAACAATTTGGCTTCTCGCCGTTATTTACTTCATATCGGGTGTTCCAGGAGGCTATGTGTTATGGTATCGGCCTCTCTACCGTGCCTTCAG
tcttgat putative branch site (score: 4)
cagtcttgattttttt CT-rich tract
tttatttacagtcttg TA-rich tract