1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagtccatatctgtaatctgtgttattaccataacataaaccattggaccatatctgatgggagattgtaattattgtttgtagGTGCCAATTGCTATTGGAGGTCCTGGTTTGGCTCAAGGAGTGAGATTCCGTAAAGATCTGGAAACACCGGGGCTTGCAAATGTAGCTGCAACAGTGATGA
species | Arabidopsis thaliana |
transcript | AT1G09780.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTTCAGATTCTAACCTCTCACACACTTCAAGCCA GTGCCAATTGCTATTGGAGGTCCTGGTTTGGCTCAAGGAGTGAGATTCCGEST: gi|125051866|gb|EL123923.1|EL123923
genomic: CTTCAGATTCTAACCTCTCACACAC-TCAAGCCAgtaagtccat ... ttgtttgtagGTGCCAATTGCTATTGGAGGTCCTGGTTTGGCTCAAGGAGTGAGATTCCG
EST: CCTCTCACACACTCAAGCCA GTGCCAATTGCTATTGGAGGTCCTGGTTTGGCTCAAGGAGTGAGATTCCGTEST: gi|86077740|gb|DR373497.1|DR373497
genomic: CCTCTCACACACTCAAGCCAgtaagtccat ... ttgtttgtagGTGCCAATTGCTATTGGAGGTCCTGGTTTGGCTCAAGGAGTGAGATTCCGT
EST: TGGATAAGGAAGGGAAGCTTCAGATTCTAACCTCTCACACACTCAAGCCA GTGCCAATTGCTATTGGAGGTCCTGGTTTGGCTCAAGGAGTGAGATTCCGTEST: gi|125250746|gb|EL264831.1|EL264831
genomic: TGGATAAGGAAGGGAAGCTTCAGATTCTAACCTCTCACACACTCAAGCCAgtaagtccat ... ttgtttgtagGTGCCAATTGCTATTGGAGGTCCTGGTTTGGCTCAAGGAGTGAGATTCCGT
EST: TGGATAAGGAAGGGAAGCTTCAGATTCTAACCTCTCACACACTCAAGCCA GTGCCAATTGCTATTGGAGGTCCTGGTTTGGCTCAAGGAGTGAGATTCCGEST: gi|125047374|gb|EL119643.1|EL119643
genomic: TGGATAAGGAAGGGAAGCTTCAGATTCTAACCTCTCACACACTCAAGCCAgtaagtccat ... ttgtttgtagGTGCCAATTGCTATTGGAGGTCCTGGTTTGGCTCAAGGAGTGAGATTCCG
EST: ATTCTAACCTCTCACACACTCAAGCCA GTGCCAATTGCTATTGGAGGTCCTGGTTTGGCTCAAGGAGTGAGATTCCGTEST: gi|86081556|gb|DR377313.1|DR377313
genomic: ATTCTAACCTCTCACACACTCAAGCCAgtaagtccat ... ttgtttgtagGTGCCAATTGCTATTGGAGGTCCTGGTTTGGCTCAAGGAGTGAGATTCCGT
EST: TGGATAAGGAAGGGAAGCTTCAGATTCTAACCTCTCACACACTCAAGCCA GTGCCAATAGCTATTGGAGGTCCTGGTTTGGCTCAAGGAGTGAGATTCCGTEST: gi|125230240|gb|EL244325.1|EL244325
genomic: TGGATAAGGAAGGGAAGCTTCAGATTCTAACCTCTCACACACTCAAGCCAgtaagtccat ... ttgtttgtagGTGCCAATTGCTATTGGAGGTCCTGGTTTGGCTCAAGGAGTGAGATTCCGT
EST: CACACACTCAAGCCA GTGCCAATTGCTATTGGAGGTCCTGGTTTGGCTCAAGGAGTGAGATTCCGT
genomic: CACACACTCAAGCCAgtaagtccat ... ttgtttgtagGTGCCAATTGCTATTGGAGGTCCTGGTTTGGCTCAAGGAGTGAGATTCCGT
cataacataaaccattggaccatatctgatgggagattgtaattattgtttgtagGTGCCAATTGCTATTGGAGGTCCTGGTTTGGCTCAAGGAGTGAGATTCCGTAAAGATCTGGAAACACCGGGGCTTGCAAATGTAGCTGCAACAGTGATGA
attgtaattattgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtccatatctgtaatctgtgttattaccataacataaaccattggaccatatctgatgggagattgtaattattgtttgtagGTGCCAATTGCTATTGGAGGTCCTGGTTTGGCTCAAGGAGTGAGATTCCGTAAAGATCTGGAAACACCGGGGCTTGCAAATGTAGCTGCAACAGTGATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC