1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatgtaaaagatatcttattcttattcctggaagatatgagcttgtacttttcttgaattagccatagaatagtatgattatgtaatttgatcatatgatgtcacccagaagtttattatctaaggccatttgtaataactttttatttgggacataactgatgcagGAGGATGCAGTTGATCCGAAGAGCAGGCACAAGGGGAAGCTGGAGACTGAGAGCTTACTGCAATCAAAAGGTGTAAACTGGACTTCTATACGTCCTGTCT
species | Arabidopsis thaliana |
transcript | AT1G09340.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATATCTTGCCACATTGTGAG GAGGATGCAGTTGATCCGAAGAGCAGGCACAAGGGGAAGCTGGAAGACTGAEST: gi|125199140|gb|EL214094.1|EL214094
genomic: ATATCTTGCCACATTGTGAGgtatgtaaaa ... actgatgcagGAGGATGCAGTTGATCCGAAGAGCAGGCACAAGGGGAAGCTGGA-GACTGA
EST: ATATCTTGCCACATTGTGAG GAGGATGCAGTTGATCCGAAGAGCAGGCACAAGGGGAAGCTGGAGACTGAGEST: gi|125134448|gb|EL175358.1|EL175358
genomic: ATATCTTGCCACATTGTGAGgtatgtaaaa ... actgatgcagGAGGATGCAGTTGATCCGAAGAGCAGGCACAAGGGGAAGCTGGAGACTGAG
EST: CACATTGTGAG GAGGATGCAGTTGATCCGAAGAGCAGGCACAAGGGGAAGCTGGAGACTGAGEST: gi|125030830|gb|EL103099.1|EL103099
genomic: CACATTGTGAGgtatgtaaaa ... actgatgcagGAGGATGCAGTTGATCCGAAGAGCAGGCACAAGGGGAAGCTGGAGACTGAG
EST: GTTCTTCAGCTGGTGTTTATCTGAAATCTGATATCTTGCCACATTGTGAG GAGGATGCAGTTGATCEST: gi|124764116|gb|EH854246.1|EH854246
genomic: GTTCTTCAGCTGGTGTTTATCTGAAATCTGATATCTTGCCACATTGTGAGgtatgtaaaa ... actgatgcagGAGGATGCAGTTGATC
EST: CTGGTGTTTATCTGAAATCTGATATCTTGCCACATTGTGAG GAGGATGCAGTTGATCCGAAGAGCAGGCACAAGGGGAAGCTGGEST: gi|125005135|gb|EL077404.1|EL077404
genomic: CTGGTGTTTATCTGAAATCTGATATCTTGCCACATTGTGAGgtatgtaaaa ... actgatgcagGAGGATGCAGTTGATCCGAAGAGCAGGCACAAGGGGAAGCTGG
EST: CTGGNGTTTATCTGAAATCTGATATCTTGCCACATTGTGAG GAGGATGCAGTTGATCCGAAGAGCAGGCACAAGGGGAAGCEST: gi|125029870|gb|EL102139.1|EL102139
genomic: CTGGTGTTTATCTGAAATCTGATATCTTGCCACATTGTGAGgtatgtaaaa ... actgatgcagGAGGATGCAGTTGATCCGAAGAGCAGGCACAAGGGGAAGC
EST: CCACATTGTGAG GAGGATGCAGTTGATTCCGAAGAGCAGGCACAAGGGGAAGCTGGAGACTGAEST: gi|124750536|gb|EH840666.1|EH840666
genomic: CCACATTGTGAGgtatgtaaaa ... actgatgcagGAGGATGCAGTTGA-TCCGAAGAGCAGGCACAAGGGGAAGCTGGAGACTGA
EST: GTTCTTCAGCTGGTGTTTATCTGAAATCTGATATCTTGCCACATTGTGAG GAGGATGCAGTTGAEST: gi|163997201|gb|ES177181.1|ES177181
genomic: GTTCTTCAGCTGGTGTTTATCTGAAATCTGATATCTTGCCACATTGTGAGgtatgtaaaa ... actgatgcagGAGGATGCAGTTGA
EST: GTTTATCTGAAATCTGATATCTTGCCACATTGTGAG GAGGATGCAGTTGATCCGAAGAGCAGGCACAAGGGGAAGCTGGAGACTGAGEST: gi|125211534|gb|EL226488.1|EL226488
genomic: GTTTATCTGAAATCTGATATCTTGCCACATTGTGAGgtatgtaaaa ... actgatgcagGAGGATGCAGTTGATCCGAAGAGCAGGCACAAGGGGAAGCTGGAGACTGAG
EST: GATATCTTGCCACATTGTGAG GAGGATGCAGTTGATCCGAAGAGCAGGCACAAGGGGAAGCTGGAGACTGAGEST: gi|125309250|gb|EL323335.1|EL323335
genomic: GATATCTTGCCACATTGTGAGgtatgtaaaa ... actgatgcagGAGGATGCAGTTGATCCGAAGAGCAGGCACAAGGGGAAGCTGGAGACTGAG
EST: GTTCTTCAGCTGGTGTTTATCTGAAATCTGATATCTTGCCACATTGTGAG GAGGATGCAGTTGATCCGAAGAGCAGGCACAAGGEST: gi|125155403|gb|EL185550.1|EL185550
genomic: GTTCTTCAGCTGGTGTTTATCTGAAATCTGATATCTTGCCACATTGTGAGgtatgtaaaa ... actgatgcagGAGGATGCAGTTGATCCGAAGAGCAGGCACAAGG
EST: GTTCTTCAGCTGGTGTTTATCTGAAATCTGATATCTTGCCACATTGTGAG GAGGATGCAAGTTGATCCGAAGAGCAGGCACAAGGEST: gi|124849937|gb|EH934374.1|EH934374
genomic: GTTCTTCAGCTGGTGTTTATCTGAAATCTGATATCTTGCCACATTGTGAGgtatgtaaaa ... actgatgcagGAGGATGCA-GTTGATCCGAAGAGCAGGCACAAGG
EST: TTCTTTCAGCTGGTGTTTATCTGAAATCTGATATCTTGCCACATTGTGAG GAGGATGCAGTTGATCCGAAGAGCAGGCEST: gi|116412031|gb|EG454623.1|EG454623
genomic: TTC-TTCAGCTGGTGTTTATCTGAAATCTGATATCTTGCCACATTGTGAGgtatgtaaaa ... actgatgcagGAGGATGCAGTTGATCCGAAGAGCAGGC
EST: GTTCTTCAGCTGGTGTTTATCTGAAATCTGATATCTTGCCACATTGTGAG GAGGATGCAGTTGATCCGAAGAGCAGGCACAAGGGGAAGCTGGAGACTGAGEST: gi|124959439|gb|EL034143.1|EL034143
genomic: GTTCTTCAGCTGGTGTTTATCTGAAATCTGATATCTTGCCACATTGTGAGgtatgtaaaa ... actgatgcagGAGGATGCAGTTGATCCGAAGAGCAGGCACAAGGGGAAGCTGGAGACTGAG
EST: GTTCTTCAGCTGGTGTTTATCTGAAATCTGATATCTTGCCACATTGTGAG GAGGATGCAGTTG
genomic: GTTCTTCAGCTGGTGTTTATCTGAAATCTGATATCTTGCCACATTGTGAGgtatgtaaaa ... actgatgcagGAGGATGCAGTTG
tttattatctaaggccatttgtaataactttttatttgggacataactgatgcagGAGGATGCAGTTGATCCGAAGAGCAGGCACAAGGGGAAGCTGGAGACTGAGAGCTTACTGCAATCAAAAGGTGTAAACTGGACTTCTATACGTCCTGTCT
atttgtaataactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtaaaagatatcttattcttattcctggaagatatgagcttgtacttttcttgaattagccatagaatagtatgattatgtaatttgatcatatgatgtcacccagaagtttattatctaaggccatttgtaataactttttatttgggacataactgatgcagGAGGATGCAGTTGATCCGAAGAGCAGGCACAAGGGGAAGCTGGAGACTGAGAGCTTACTGCAATCAAAAGGTGTAAACTGGACTTCTATACGTCCTGTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT