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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttctcacttaagcatttggttcagaatttcatgacctaattaggtgaagaatctgagtttgattacttcatcttcctcattcctgttatgcaattgcagGTCATTACAAATAGGGATATACTTGTGGAACTACTATCAAAGCATACTGGGAAT

Basic information

species Arabidopsis thaliana
transcript AT1G09130.2
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124799194|gb|EH888873.1|EH888873
EST:     CTTCTTCTGGGTTGATGCCTGCCAGTGATGTCCTGATTCGGGCCAAAGAG                         GTCATTACAAATAGGGATAATACTTGTGGAACTACTATCAAAGCATAC
genomic: CTTCTTCTGGGTTGATGCCTGCCAGTGATGTCCTGATTCGGGCCAAAGAGgtttgatgaa ... gcaattgcagGTCATTACAAATAGGGATA-TACTTGTGGAACTACTATCAAAGCATAC
EST: gi|124901469|gb|EH975549.1|EH975549
EST:     ATTCGGGCCAAAGAG                         GTCATTACAAATAGGGATATACTTGTGGAACTACTATCAAAGCATACTGGG
genomic: ATTCGGGCCAAAGAGgtttgatgaa ... gcaattgcagGTCATTACAAATAGGGATATACTTGTGGAACTACTATCAAAGCATACTGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaagaatctgagtttgattacttcatcttcctcattcctgttatgcaattgcagGTCATTACAAATAGGGATATACTTGTGGAACTACTATCAAAGCATACTGGGAAT
            gtttgat  putative branch site (score: 5)
             tttgatta  TA-rich tract