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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcaaaaaataatttgttttctacaaagtatattgcaggaagcattctgttctgtgtattctcttatttcttagttggtctagtataacatatccttcagagtgatttaatgtgattgacttgatttcatctctagGCTACGATGACTGGTGCAAAATCTATGAAAGGGACACCATATTGGATGGCTCCGGAAGTTATTCTTCAAACTGGACATAGCTT

Basic information

species Arabidopsis thaliana
transcript AT1G09000.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G09000.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: LOC_Os08g32600.1 (Oryza sativa), 3'ss of exon 6
gtaagtcaaaaaataatttgttttctacaaagtatattgcaggaagcattctgttctgtgt-attctcttatttcttagttggtctagtataacatatccttcagagtgatttaatgtgattgacttgatttcatctctagGCTACGATGACTGGTGCAAAATCTATGAAAGGGACACCATATTGGATGGCTCCGGAAGTTATTCTTCAAACTGGACATAGCTT
                                            ||  |||||||   |||  |    |||  |    | |  ||     |   |  | |  ||   | || |  | |  || || || | | | || |    |  |  |||   ||| ||  | |||||||||||||||||||||||||| || ||||| ||| ||   | ||| |||  |||
------------------------------------------acagggttctgttgcttgttgtgtgtttaaatgcaggatcatccctactgttacgttccacatgtttatatttt-tctttcacatgctattaccttt----tcagGCGACCACTGCCAAGACAATGAAAGGGACACCATATTGGATGGCCCCAGAAGTAATTGTTGGGAGTGGGCATGACTT

upper sequence: AT1G09000.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA19G42340.1 (Glycine max), 3'ss of exon 6
gtaagtcaaaaaata---atttgttttctacaaagtatattgcaggaagcattctgttctgtgtattctcttatttcttagttggtctagtataacatatccttcagagtgatttaatgtgattgacttgatttcatctctagGCTACGATGACTGGTGCAAAATCTATGAAAGGGACACCATATTGGATGGCTCCGGAAGTTATTCTTCAAACTGGACATAGCTT
||||    |    ||   ||   | | ||||   |||| ||||  ||      |  || || |   | |  | |||   | || || ||    |   | |  ||        |||  | | | | |            || |||| || ||  ||||||| || || |||||||| || ||||||||||||||||| ||||||||||| || ||||| ||| ||||
gtaatctcagtcttatctatagctctactactgtgtatgttgcttga------cctttgtgagggcttttctgtttgcaaatttgtttaa-gcagtgttttttttt------ttttttataaataa------------tccagGCAACCATTTCTGGTGCCAAGTCCATGAAAGGTACTCCATATTGGATGGCTCCAGAAGTTATTCTCCAGACTGGGCATTGCTT

upper sequence: AT1G09000.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA03G39760.1 (Glycine max), 3'ss of exon 6
gtaagtcaaaaaataatttgttttctacaaagtatattgcaggaagcattctgttctgtgtattctcttatttcttagttggtctagtataacatatccttcagagtgatttaatgtgattgacttgatttcatctctagGCTACGATGACTGGTGCAAAATCTATGAAAGGGACACCATATTGGATGGCTCCGGAAGTTATTCTTCAAACTGGACATAGCTT
                   ||  |||      |||||    | |    | || || ||| | |    |||  | |  |  || ||  | |         | || | |  ||||| |   |    ||   ||    ||||||| || ||  ||||||| || || ||||| || || ||||||||||||||||| ||||||||||| || ||||| ||||||||
-------------------gtaatctcagtcttatat----gtagctctactattgtgtatgtcgctttacctttgtgaggg-ctcttctg------tttgcacatttgtttaa-gcagtgccttttccttttaatctagGCAACCATTTCTGGTGCCAAGTCCATGAAGGGTACTCCATATTGGATGGCTCCAGAAGTTATTCTCCAGACTGGGCATAGCTT

upper sequence: AT1G09000.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: Vv14s0128g00430.t01 (Vitis vinifera), 3'ss of exon 6
gtaagtcaaaaaataatttgttttctacaaagtatattgcaggaagcattctgttctgtgtattctcttatttctt-agttggtctagtata---acatatccttcagagtgatttaatgtgattgacttgatttcatctctagGCTACGATGACTGGTGCAAAATCTATGAAAGGGACACCATATTGGATGGCTCCGGAAGTTATTCTTCAAACTGGACATAGCTT
                                         | |  || | | | || ||| ||   | |||| || |||||   || | |       ||   ||       || |  | |||||||     |     |  |||||||| ||  | ||||| || || |||||||| || || |||||||||||||||||||| ||||| || || || ||||||||
-----------------------------------------gtacacactatctgctctgtgtttattcatttattcagttgacttaatttttgtgattacttttgctcaaaatctcgtctgattgagacattggttgccatagGCTACCATTTCAGGTGCCAAGTCCATGAAAGGCACCCCGTATTGGATGGCTCCGGAAGTCATTCTCCAGACAGGCCATAGCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtataacatatccttcagagtgatttaatgtgattgacttgatttcatctctagGCTACGATGACTGGTGCAAAATCTATGAAAGGGACACCATATTGGATGGCTCCGGAAGTTATTCTTCAAACTGGACATAGCTT
                                           tttcatctct  CT-rich tract
                     tgatttaat  TA-rich tract