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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagttatacgtcttcatttaatgatttacactacaaaattttcaaataggcatctgccaagaataccgttggacatcattgtggatggtttgcatgtacgcaactgctcattgtgatgtcaacgtatcacacaatagttttcttgtgaaaaccacatcttacctttgctgcagAGTTGATGAGGGGTTTCCGAATGTCACTTTCCATTTCGAGAACTCGGTTTTCCTCAGGGTTTATCCTCATGACTATCTGTTCCCTCAT

Basic information

species Arabidopsis thaliana
transcript AT1G05840.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86085590|gb|DR381349.1|DR381349
EST:     AAAGTTCACATAGTGGATAAAGATTATAAATGCTTTCAGTACTCTGGCAG                         AGTTGATGAGGGGTTTCCGAATGTCACTTTCCATTTCGAGAACTCGGTTTT
genomic: AAAGTTCACATAGTGGATAAAGATTATAAATGCTTTCAGTACTCTGGCAGgttagttata ... tttgctgcagAGTTGATGAGGGGTTTCCGAATGTCACTTTCCATTTCGAGAACTCGGTTTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaacgtatcacacaatagttttcttgtgaaaaccacatcttacctttgctgcagAGTTGATGAGGGGTTTCCGAATGTCACTTTCCATTTCGAGAACTCGGTTTTCCTCAGGGTTTATCCTCATGACTATCTGTTCCCTCAT
                                     atcttac  putative branch site (score: 3)
                                      tcttaccttt  CT-rich tract
              aatagtttt  TA-rich tract