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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactggggtttaactctcttatacgtgaacgtacaagtgttttgtagattaagttgtacctctgtcatattattgacctacagTTAAGTAGTATCTGGTGCATCATATGCTTGATTGGGTTTCCATTGGATCAAGCAACTTTTAAATGGGAAATAACTGAGACCAAAGCATGTGCCTCGATTT

Basic information

species Arabidopsis thaliana
transcript AT1G04080.3
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G04080.3 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: Vv07s0005g04280.t01 (Vitis vinifera), 3'ss of exon 6
gtactggggtttaactctc--ttatacgtgaacgtacaagtgttttgtagattaagttgtacctct-gtcatattattgacctacagTTAAGTAGTATCTGGTGCATCATATGCTTGATTGGGTTTCCATTGGATCAAGCAACTTTTAAATGGGAAATAACTGAGACCAAAGCATGTGCCTCGATTT
||| | | ||||   | |   | || | ||||  |   | || ||||||| || ||||||   ||| || |||| |||||| |||||||||||| |||||| |||||||||||||| ||||| |                                                               
gtatttgagtttgtttgttgttcatccatgaaaatctcaatggtttgtagttttagttgtctttcttgttatat-attgacttacagTTAAGTAATATCTGCTGCATCATATGCTTTATTGGCTAA-------------------------------------------------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acgtacaagtgttttgtagattaagttgtacctctgtcatattattgacctacagTTAAGTAGTATCTGGTGCATCATATGCTTGATTGGGTTTCCATTGGATCAAGCAACTTTTAAATGGGAAATAACTGAGACCAAAGCATGTGCCTCGATTT
                                          tattgac  putative branch site (score: 2)
                                    tcatattatt  TA-rich tract