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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttttgcatatataccactcatcttctcattgaaatttaaaaatcaaggaatttatgatatatgtgtatacatatttatagGTGGGCTATTGTTCAAGATGGGTGAGAGCAACATGCAATACGTGACGTCTACATCGTTCTTGCTCTTGACCTACGCCAAATACTTAACCTCTGCTCGCAC

Basic information

species Arabidopsis thaliana
transcript AT1G02800.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G02800.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA19G40030.1 (Glycine max), 3'ss of exon 8
----gtttttgcatatataccactcatcttctcattgaaatttaaaaatcaa--ggaatttatgatatatg----tgtatacatatttatagGTGGGCTATTGTTCAAGATGGGTGAGAGCAACATGCAATACGTGACGTCTACATCGTTCTTGCTCTTGACCTACGCCAAATACTTAACCTCTGCTCGCAC
    | |||    |   |  |   |   |  | | ||   | |||     ||  |  |  | || |   ||    | || | |  |    |||||| ||  | |||||||||||||| ||||||||||||||||| || || || || ||| | |||||  | || || |||||| | ||    || |    
gtgaggtttctttttcttttcttactcttcttaactgtggtctaatgtgtaactgttacctttggttcctggttctttaaaaaactacgcagGTGGTCTTCTATTCAAGATGGGTGATAGCAACATGCAATACGTCACTTCCACCTCCTTCATACTCTTAGCTTATGCTAAATACCTGACGAAAGCCCATGT

upper sequence: AT1G02800.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA03G37420.1 (Glycine max), 3'ss of exon 6
-----------------------gtttttgcatatataccact-catcttctcattgaaatttaaaaatcaaggaatttatgatatatgtgtatacatattt---atagGTGGGCTATTGTTCAAGATGGGTGAGAGCAACATGCAATACGTGACGTCTACATCGTTCTTGCTCTTGACCTACGCCAAATACTTAACCTCTGCTCGCAC
                        ||||| | ||    |  ||   |  ||| ||  |  | |||  || ||  |  || || |   ||  | |  ||| |      |||||| ||  | |||||||||||||| |||||||||||||| || || || || || ||| | |||||  | || || |||||||| |||   || |    
gtaaggttccttttcttttttcttttttttcttactctcagctgtgtggtctaatcaatgtgtaaccattaattacctt-tggttcctggttctttataatctacgcagGTGGTCTTCTATTCAAGATGGGTGATAGCAACATGCAATATGTAACATCCACCTCATTCATACTCTTAGCTTATGCTAAATACTTGACCAAAGCCCATGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125113395|gb|EL164227.1|EL164227
EST:     AATATACACCAG                         GTGGGCTATTGTTTCAAGACGGGTGAGAGCAACATGCAATACGTGACGTCT
genomic: AATATACACCAGgtttttgcat ... atatttatagGTGGGCTATTG-TTCAAGATGGGTGAGAGCAACATGCAATACGTGACGTCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcattgaaatttaaaaatcaaggaatttatgatatatgtgtatacatatttatagGTGGGCTATTGTTCAAGATGGGTGAGAGCAACATGCAATACGTGACGTCTACATCGTTCTTGCTCTTGACCTACGCCAAATACTTAACCTCTGCTCGCAC
      aaatttaaaaatcaag  TA-rich tract