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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattaagaaacaaacagtgacctgaatcatgttttattgaatattataacaatttatggtttgtggtttgcagGATGTTGGAAAAGCTGTGTTAGAGAGTTATTCAAGAGTTCTTGAAGGTTTAGCTTTTAACATAGTTGCTTGGATTGATGATGTTCTTTATGTAGACAAAA

Basic information

species Arabidopsis thaliana
transcript AT1G01700.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G01700.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA18G46690.1 (Glycine max), 3'ss of exon 7
-----------------------------gtaattaagaaacaaacagtg-acctgaatcatgttttattgaatattataacaatttatggtttgtggtttgcagGATGTTGGAAAAGCTGTGTTAGAGAGTTATTCAAGAGTTCTTGAAGGTTTAGCTTTTAACATAGTTGCTTGGATTGATGATGTTCTTTATGTAGACAAAA
                              || ||||   | |   | |     |||||   |  | || || ||  | ||  ||  ||| ||  || |||||||||||| || ||||| ||  |||||||||||||||||||| | |||||  |||| || ||||| ||||| |||||||| ||||||||||||||||| ||| 
attttaggacactattatatgaatatcatctatttaatgtaaagtaaatatgtttgaatttgggatcatggacta--agaatgatg-atgatt-atgttttgcaGGATGTGGGGAAAGCAGTACTAGAGAGTTATTCAAGAGTTTTGGAAGGCCTAGCATTCAACATTGTTGCATGGATTGAAGATGTTCTTTATGTAGATAAA-

upper sequence: AT1G01700.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA09G39560.1 (Glycine max), 3'ss of exon 7
-------------------------------gtaattaagaaacaaacagtgacctgaatcatgttttattgaatattataacaatttatggtttgtggtttgcagGATGTTGGAAAAGCTGTGTTAGAGAGTTATTCAAGAGTTCTTGAAGGTTTAGCTTTTAACATAGTTGCTTGGATTGATGATGTTCTTTATGTAGACAAAA
                               || |||   ||  |||  |||   |||||  ||  |  | || ||  |  |  ||   |   || || ||| |||||||| || || ||  |  |||||||||||||||||||| | |||||  |||| || ||||| ||||| |||||||| |||||||||||||| || ||| 
ttttaggacaccattatatgaatatcatctagttattgtaaagtaaat-gtg-tttgaattttggatcgtggacta--aggatgatgatta--ttatgtttttcagGATGTAGGGAATGCAATACTAGAGAGTTATTCAAGAGTTTTGGAAGGCCTAGCATTCAACATTGTTGCATGGATTGAAGATGTTCTTTATGTTGATAAAT

upper sequence: AT1G01700.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA07G07980.1 (Glycine max), 3'ss of exon 7
------------------------------------------------------------------------------------------------------------gtaattaagaaacaaacagtgacctgaatcatgttttattgaatattataacaatttatggtttgtggtttgcagGATGTTGGAAAAGCTGTGTTAGAGAGTTATTCAAGAGTTCTTGAAGGTTTAGCTTTTAACATAGTTGCTTGGATTGATGATGTTCTTTATGTAGACAAAA
                                                                                                             || |  |||||| | |||  | ||  || |||   |  || |     ||| |||   |   || |  | |||||||||| ||||||||  | ||||| || || ||||||||  | ||||| ||||| || ||||| || ||||||||||| |||||||||  ||  || ||| 
gtaagttcagccacttacaacatatcaagttgaaaaataacaaaaaagacattacgaggtcatttttttacaaatgatgaacattttaggacaccatgatatggatatctattgtagaaactagcagatatctagattatgaactcatggac----taagaatgagta--ttatcttctgcagGATGTAGGAAAAGCGATATTAGAAAGCTACTCAAGAGTATTAGAAGGCTTAGCATTCAACATTGTAGCTTGGATTGAAGATGTTCTTCTTGCTGATAAAT

upper sequence: AT1G01700.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA03G01560.1 (Glycine max), 3'ss of exon 7
------------------------------------------------------------------------------------------gtaattaagaaacaaacagtgacctgaatcatgttttattgaatattataacaatttatggtttgtggtttgcagGATGTTGGAAAAGCTGTGTTAGAGAGTTATTCAAGAGTTCTTGAAGGTTTAGCTTTTAACATAGTTGCTTGGATTGATGATGTTCTTTATGTAGACAAAA
                                                                                           || |  |||||| | ||   | ||  ||  ||   |  |||  |   ||| |||  ||   || |  | |||||||||| ||||||||  | ||||| || || ||||||||  | ||||| ||||| || ||||| || ||||||||||| ||||||||| ||| ||| ||| 
gtaagtttaacctagccggttacgatttcatagcaagttgaaaaataacttacaaatgaaccacattttaggacaccatgatatggatatctactgtagaaactagcaaatatctagattgtgaactcatgatgaac-taaaaatgaata--ttatattctgcagGATGTAGGAAAAGCGATATTAGAAAGCTACTCAAGAGTATTAGAAGGCTTAGCATTCAACATTGTAGCTTGGATTGAAGATGTTCTTCATGCAGATAAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gacctgaatcatgttttattgaatattataacaatttatggtttgtggtttgcagGATGTTGGAAAAGCTGTGTTAGAGAGTTATTCAAGAGTTCTTGAAGGTTTAGCTTTTAACATAGTTGCTTGGATTGATGATGTTCTTTATGTAGACAAAA
                         ttataac  putative branch site (score: 2)
      aatcatgttttattga  TA-rich tract