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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagaacgtttatcttgtgaccaattgaaatcatagcaataccttattgaaccatcctgtactgatgttgaaagttttgttggtgctatcagGGGCTGCAAACTTGTTTGGTCTCTCTACTCTCATG

Basic information

species Arabidopsis thaliana
transcript AT1G01650.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116450140|gb|EG492732.1|EG492732
EST:     TCTGGTTTATAGAGGTGTTGGTGGTACTCTTTTGCATAGGTGGCGTAGAG                         GGGCTGCAAACTTGTTTGGTCTCTCTACTCTCATG
genomic: TCTGGTTTATAGAGGTGTTGGTGGTACTCTTTTGCATAGGTGGCGTAGAGgtagaacgtt ... gtgctatcagGGGCTGCAAACTTGTTTGGTCTCTCTACTCTCATG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aataccttattgaaccatcctgtactgatgttgaaagttttgttggtgctatcagGGGCTGCAAACTTGTTTGGTCTCTCTACTCTCATG
                      tactgat  putative branch site (score: 2)
      ttattgaa  TA-rich tract