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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatcagtcttcatttattcacatatcaaactgtgttctagagatcttagtctttaggtgtagcgatccccacagacatagatgagtgaagaatgttctttatatctttgttgtacaagtgttgaaatgagttaagttttgtttcagCTCATCGGACTCTGCCTTTGGGATGGATATGTTCAAGAGGATACTACACAGTGGCCATCCATCAATGCTCGGCTAAATTCCATTTTCCACTTAACTTAGT

Basic information

species Arabidopsis thaliana
transcript AT5G66930.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G66930.2 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: Vv00s0253g00070.t01 (Vitis vinifera), 3'ss of exon 6
gtacatcagtcttcatttattcacatatcaaactgtgttctagagatcttagtctttaggtgtagcgatccccacagacatagatgagtgaagaatgttctttatatctttgttgtacaagtgttgaaatgagttaagttttgtttcagCTCATCGGACTCTGCCTTTGGGATGGATATGTTCAAGAGGATACTACACAGTGGCCATCCATCAATGCTCGGCTAAAT-TCCATTTTCCACTTAACTTAGT-
                                             || ||  |   |       ||  ||   |     | | ||   |    || |||  | ||     || ||   || | ||    || |||     ||| ||||| ||||| || ||||| ||||||||||| |||||||||||||| || || ||||| |||||| | |||||| ||||| | |||    || |   | || | | 
------------------------------------------cccattttgcttgattaaaaacgctgtctaaatgttaaaaaatttatttgcaaagtttatgattagactgctgagtaaatatt----tgtgttg---cttggttcagTTCATCCGATTCTGCATTTGGGATGGACATGTTCAAGAGGATGCTCCAAAGTGGGCATCCAACCATGCTCAGCTAATTATCCGAGCTCAAA--AGCTGAATC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164209233|gb|ES063760.1|ES063760
EST:     CCCATTAACGATGGTGTAATCTACTACCCTTTTGAGATCACTATCCCAAG                         CTCATCGGACTCTGCCTTTGGGATGGATATGTTCAAG
genomic: CCCATTAACGATGGTGTAATCTACTACCCTTTTGAGATCACTATCCCAAGgtacatcagt ... tttgtttcagCTCATCGGACTCTGCCTTTGGGATGGATATGTTCAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgttctttatatctttgttgtacaagtgttgaaatgagttaagttttgtttcagCTCATCGGACTCTGCCTTTGGGATGGATATGTTCAAGAGGATACTACACAGTGGCCATCCATCAATGCTCGGCTAAATTCCATTTTCCACTTAACTTAGT
                                            ttttgtttc  CT-rich tract
      tttatatctttgtt  TA-rich tract