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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggtcatatattggcgtgctcacttagattagagagcagaatttagtggtatatagtcaacacttgtagtgattacttctgcttttctgtttccttagCTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAG

Basic information

species Arabidopsis thaliana
transcript AT5G66190.2
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G66190.2 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GRMZM2G059083_T04 (Zea mays), 3'ss of exon 4
----gtatggtcatatattggcgtgctcacttagattagagagcagaatttagtggtatatagtcaaca-cttgtagtgattacttctgcttttctgtttccttagCTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAG
    |||  || | |  |  ||     ||   |   |||  |||      |    | |     | | || || | | || | | | ||| | |     ||| | |||| | ||| || || || || ||||| ||| | || || |||||||| |||||||| |||||||||||||||||||||
gtgagtagagttaga-gtcagctcatccatccat-ctagctagctatccctccatgaaaccgcttatcatctcgcactggtaaatcctgatgtg----ttcatcagCTCGCAACGGGTACCGGCATCGCTCCGTTCCGCTCCTTCTTGTGGAAGATGTTCTTCGAGGAGCACGAGGACTACAAG

upper sequence: AT5G66190.2 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GRMZM2G059191_T01 (Zea mays), 3'ss of exon 4
gtatggtcatatattggcgtgctcacttagattagagagcagaatttagtggtatatagtcaac--acttg-tagtgat-tacttctgcttttctgtttccttagCTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAG
   ||| |||  ||  |    || ||| | || ||| | | |||  |     ||| |  ||  |  |||      |||| |   | ||  | | |||      |||| | ||| || || || || ||||| ||| | || || |||||||| |||||| | |||||||||||||||||||||
--ctggacatgcat--gtcctctaactga-atgagacaactgaacatgcatatatgtcctctgctgactgaactctgatgtgtgtgtgtgtgtgtgtaattgcagCTCGCAACGGGGACCGGTATTGCTCCGTTCCGCTCCTTCTTGTGGAAGATGTTCCTGGAGGAGCACGAGGACTACAAG

upper sequence: AT5G66190.2 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA11G08230.1 (Glycine max), 3'ss of exon 5
-----------------------------------gtatggtcatatattggcgtgctcacttagattagagagcagaatttagtggtat-atagtcaacacttgtagtgattacttctgcttttctgtt-tccttagCTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAG
                                     | |   || ||    | | || |  ||| | | | |       ||  || | | ||  ||| || |   | |||| | |     |||| |    |   ||| | | ||| ||||| ||||| || |||||| | |||||||| |||||||||||||||||| |||| || || ||||||
gtacacattacccaaccgtcttcatcttaattgaaaaaggaatatttaaatcctttcttatatag-tcataaattcatgattgctgttttgattttcaccattaccattgatgattataattttttttccatatatagTTGGCAACTGGAACAGGAATTGCCCCATTCCGCTCATTTTTATGGAAAATGTTCTTTGAGAAGCATGATGATTACAAG

upper sequence: AT5G66190.2 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA02G05350.1 (Glycine max), 3'ss of exon 5
gtatggtcatatattggcgtgctcacttagattagagagcagaatttagtggtatatagtcaacacttgtagtgattacttctgcttttctgtttccttagCTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAG
         || ||||    |   ||  | ||   | |   ||   |  || | | | |     |  |  |    | |    ||   || | ||  |  || | ||||| ||||| || || || |||||  | |||||||| |||||||||||||||||| ||||||| || ||||||
--------gtacattgata-gaaaacgaatatggtatatgtgatggtcatgat-tgttgctctgatcttcaccattgatcattgaaattttcttcac--agTTGGGAACTGGAACCGGGATTGCCCCATTTCGCTCATTTTTATGGAAAATGTTCTTTGAGAAGCACGAAGATTACAAG

upper sequence: AT5G66190.2 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA16G23710.1 (Glycine max), 3'ss of exon 5
gtatggtcatatattggcgtgctcacttagattagagagcagaatttagtggtatatagtcaacacttgtagtgattacttctgcttttctgtttccttagCTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAG
|||   | ||| |    ||       |     |   |  ||  |||  || |  | |  ||  |||    | |||| | |     |||  |     |  || | ||||| ||||| || || || |||||  | |||||||| |||||||||||||||||| | ||||| || ||||||
gtacattaatagaa-aacgaatatggtatatgtgatggtcatgatt--gttgc-tctgatcttcacc---attgatcattgaaattttctt-----cacagTTGGGAACCGGAACCGGGATTGCCCCATTTCGCTCATTTTTATGGAAAATGTTCTTTGAGAAACACGAAGATTACAAG

upper sequence: AT5G66190.2 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: Vv04s0023g03510.t01 (Vitis vinifera), 3'ss of exon 5
gtatggt-catatattggcgtgctcacttagattagag--agcagaatttagtggtatatagtcaacacttgtagtgattacttctgcttttctgtttccttagCTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAG
||||  | |||      || |     || |   ||  |     |   |||      || || |   |   |||| || |      || |||  |  || |  |||||| ||| ||||||||||| ||||| ||| | ||||| ||||||||||||||||||||| |||| || |||||||||
gtattattcattctccagcatttgtcctaatgctatggttgtaatggttttccaaaatgtattagtcgtatgtattgttacaacatgatttcttcattgc--agCTTGCAACTGGAACTGGAATTGCTCCTTTCCGCTCATTCTTGTGGAAAATGTTCTTTGAGAAGCATGAAGACTACAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124719343|gb|EH810745.1|EH810745
EST:     TTGGCAAGGAAATGCTTATGCCAAAAGACCCCAATGCCACCATCATCATG                         CTTGGAACAGGAA
genomic: TTGGCAAGGAAATGCTTATGCCAAAAGACCCCAATGCCACCATCATCATGgtatggtcat ... gtttccttagCTTGGAACAGGAA
EST: gi|125019983|gb|EL092252.1|EL092252
EST:     TTGGCAAGGAAATGCTTATGCCAAAAGACCCCAATGCCACCATCATCATG                         CTTGGAACAGGAACTGGAATAGCTCCATT
genomic: TTGGCAAGGAAATGCTTATGCCAAAAGACCCCAATGCCACCATCATCATGgtatggtcat ... gtttccttagCTTGGAACAGGAACTGGAATAGCTCCATT
EST: gi|164176052|gb|ES094868.1|ES094868
EST:     TATGCCAAAAGACCCCAATGCCACCATCATCATG                         CTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTGTGGAAA-TG
genomic: TATGCCAAAAGACCCCAATGCCACCATCATCATGgtatggtcat ... gtttccttagCTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTGTGGAAAATG
EST: gi|125170372|gb|EL193888.1|EL193888
EST:     GCCAAAAGACCCCAATGCCACCATCATCATG                         CTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTGTGGAAAATG
genomic: GCCAAAAGACCCCAATGCCACCATCATCATGgtatggtcat ... gtttccttagCTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTGTGGAAAATG
EST: gi|124831743|gb|EH916182.1|EH916182
EST:     TTGGCAAGGAAATGCTTATGCCAAAAGACCCCAATGCCACCATCATCATG                         CTTGGAACAGGAACTGGAA
genomic: TTGGCAAGGAAATGCTTATGCCAAAAGACCCCAATGCCACCATCATCATGgtatggtcat ... gtttccttagCTTGGAACAGGAACTGGAA
EST: gi|125072346|gb|EL137074.1|EL137074
EST:     AAATGCTTATGCCAAAAGACCCCAATGCCACCATCATCATG                         CTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTGTGGAAAATG
genomic: AAATGCTTATGCCAAAAGACCCCAATGCCACCATCATCATGgtatggtcat ... gtttccttagCTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTGTGGAAAATG
EST: gi|125201079|gb|EL216033.1|EL216033
EST:     ATGCCAAAAGACCCCAATGCCACCATCATCATG                         CTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTGTGGAAAATG
genomic: ATGCCAAAAGACCCCAATGCCACCATCATCATGgtatggtcat ... gtttccttagCTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTGTGGAAAATG
EST: gi|124889916|gb|EH968818.1|EH968818
EST:     TGGCAAGGAAATTGCTTATGCCAAAAGACCCCAATGCCACCATCATCATG                         CTTGGAACAGGAACTGGAATAGCTCCATT
genomic: TGGCAAGGAAA-TGCTTATGCCAAAAGACCCCAATGCCACCATCATCATGgtatggtcat ... gtttccttagCTTGGAACAGGAACTGGAATAGCTCCATT
EST: gi|124952781|gb|EL028024.1|EL028024
EST:     TTGGCAAGGAAATGCTTACGCCAAAAGACCCCAATGCCACCATCATCATG                         CTTGGAACAGGAACTGGAATAG
genomic: TTGGCAAGGAAATGCTTATGCCAAAAGACCCCAATGCCACCATCATCATGgtatggtcat ... gtttccttagCTTGGAACAGGAACTGGAATAG
EST: gi|125036193|gb|EL108462.1|EL108462
EST:     AGGAAATGCTTATGCCAAAAGACCCCAATGCCACCATCATCATG                         CTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTGTGGAAAATG
genomic: AGGAAATGCTTATGCCAAAAGACCCCAATGCCACCATCATCATGgtatggtcat ... gtttccttagCTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTGTGGAAAATG
EST: gi|125305966|gb|EL320051.1|EL320051
EST:     TTGGCAAGGAAATGCTTATGCCAAAAGACCCCAATGCCACCATCATCATG                         CTTGGAACAGGAACTGGAATAG
genomic: TTGGCAAGGAAATGCTTATGCCAAAAGACCCCAATGCCACCATCATCATGgtatggtcat ... gtttccttagCTTGGAACAGGAACTGGAATAG
EST: gi|125163598|gb|EL190368.1|EL190368
EST:     CCATCATCATG                         CTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTGTGGAAAATG
genomic: CCATCATCATGgtatggtcat ... gtttccttagCTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTGTGGAAAATG
EST: gi|125071914|gb|EL136790.1|EL136790
EST:     GCAAGGAAATGCTTATGCCAAAAGACCCCAATGCCACCATCATCATG                         CTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTGTGGAAAA
genomic: GCAAGGAAATGCTTATGCCAAAAGACCCCAATGCCACCATCATCATGgtatggtcat ... gtttccttagCTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTGTGGAAAA
EST: gi|124747179|gb|EH837329.1|EH837329
EST:     TTGGCAAGGAAATGCTTATGCCAAAAGACCCCAATGCCACCATCATCATG                         CTTGGAACAGGAAC
genomic: TTGGCAAGGAAATGCTTATGCCAAAAGACCCCAATGCCACCATCATCATGgtatggtcat ... gtttccttagCTTGGAACAGGAAC
EST: gi|125184433|gb|EL199387.1|EL199387
EST:     TTGGCAAGGAAATGCTTATGCCAAAAGACCCCAATGCCACCATCATCATG                         CTTGGAACAGGAACTGGAAT
genomic: TTGGCAAGGAAATGCTTATGCCAAAAGACCCCAATGCCACCATCATCATGgtatggtcat ... gtttccttagCTTGGAACAGGAACTGGAAT
EST: gi|124908955|gb|EH983035.1|EH983035
EST:     TTGGCAAGGAAATGCTTATGCCAAAAGACCCCAATGCCACCATCATCATG                         CTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTG
genomic: TTGGCAAGGAAATGCTTATGCCAAAAGACCCCAATGCCACCATCATCATGgtatggtcat ... gtttccttagCTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTG
EST: gi|125205017|gb|EL219971.1|EL219971
EST:     TTGGCAAGGAAATGCTTATGCCAAAAGACCCCAATGCCACCATCATCATG                         CTTGGAACAGGAACTGGAATAGCTCCATTCAGATCTATTTTT
genomic: TTGGCAAGGAAATGCTTATGCCAAAAGACCCCAATGCCACCATCATCATGgtatggtcat ... gtttccttagCTTGGAACAGGAACTGGAATAGCTCCATTCAGATC-ATTTTT
EST: gi|124832069|gb|EH916508.1|EH916508
EST:     TGGCAAGGAAATGCTTATGACCAAAAGACCCCAATGCCACCATCATCATG                         CTTGGAACAGGAACTGGAATA
genomic: TGGCAAGGAAATGCTTATG-CCAAAAGACCCCAATGCCACCATCATCATGgtatggtcat ... gtttccttagCTTGGAACAGGAACTGGAATA
EST: gi|124782512|gb|EH872455.1|EH872455
EST:     TTGGCAAGGAAATGCTTATGCCAAAAGACCCCAATGCCACCATCATCATG                         CTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTGTGGAA
genomic: TTGGCAAGGAAATGCTTATGCCAAAAGACCCCAATGCCACCATCATCATGgtatggtcat ... gtttccttagCTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTGTGGAA
EST: gi|163973373|gb|ES024621.1|ES024621
EST:     TGGCAAGGAAATGTCTTATGCCAAAAGACCCCAATGCCACCATCATCATG                         CTTGGAACAGGAACTGGAATAG
genomic: TGGCAAGGAAATG-CTTATGCCAAAAGACCCCAATGCCACCATCATCATGgtatggtcat ... gtttccttagCTTGGAACAGGAACTGGAATAG
EST: gi|125243507|gb|EL257592.1|EL257592
EST:     CTTATGCCAAAAGACCCCAATGCCACCATCATCATG                         CTTGGAACAGGAACTGGAATAGCTCCATTCAGATCTATTTTTGTGGAAAAT
genomic: CTTATGCCAAAAGACCCCAATGCCACCATCATCATGgtatggtcat ... gtttccttagCTTGGAACAGGAACTGGAATAGCTCCATTCAGATC-ATTTTTGTGGAAAAT
EST: gi|125206793|gb|EL221747.1|EL221747
EST:     TTGGCAAGGAAATGCTTATGCCAAAAGACCCCAATGCCACCATCATCACG                         CTTGGAACAGGAA
genomic: TTGGCAAGGAAATGCTTATGCCAAAAGACCCCAATGCCACCATCATCATGgtatggtcat ... gtttccttagCTTGGAACAGGAA
EST: gi|125123156|gb|EL169605.1|EL169605
EST:     TTGGCAAGGAAATGCTTATGCCAAAAGACCCCAATGCCACCATCATCATG                         CTTGGAACAGGAACTGGAATAGCTCCATTCAGATCA
genomic: TTGGCAAGGAAATGCTTATGCCAAAAGACCCCAATGCCACCATCATCATGgtatggtcat ... gtttccttagCTTGGAACAGGAACTGGAATAGCTCCATTCAGATCA
EST: gi|124793941|gb|EH883620.1|EH883620
EST:     CCAAAAGACCCCAATGCCACCATCATCATG                         CTTGGAACAGGAACTGGAATAGCTCCATTCAGATCAATTTTTGTGGAAAAT
genomic: CCAAAAGACCCCAATGCCACCATCATCATGgtatggtcat ... gtttccttagCTTGGAACAGGAACTGGAATAGCTCCATTCAGATCA-TTTTTGTGGAAAAT
EST: gi|124897686|gb|EH973900.1|EH973900
EST:     TTGGCAAGGAAATGCTTATGCCAAAAGACCCCAATGCCACCATCATCATG                         CTTGGAACAGGAACTGGAATAGCTCCATT
genomic: TTGGCAAGGAAATGCTTATGCCAAAAGACCCCAATGCCACCATCATCATGgtatggtcat ... gtttccttagCTTGGAACAGGAACTGGAATAGCTCCATT
EST: gi|125301782|gb|EL315867.1|EL315867
EST:     AAAAGACCCCAATGCCACCATCATCATG                         CTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTGTGGAAAATG
genomic: AAAAGACCCCAATGCCACCATCATCATGgtatggtcat ... gtttccttagCTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTGTGGAAAATG
EST: gi|125047510|gb|EL119779.1|EL119779
EST:     TGGCAAGGAAATGCTTTATGCCAAAAGACCCCAATGCCACCATCATCATG                         CTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTT
genomic: TGGCAAGGAAATGC-TTATGCCAAAAGACCCCAATGCCACCATCATCATGgtatggtcat ... gtttccttagCTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTT
EST: gi|125197378|gb|EL212332.1|EL212332
EST:     CTTATGCCAAAAGACCCCAATGCCACCATCATCATG                         CTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTGTGGAAAATG
genomic: CTTATGCCAAAAGACCCCAATGCCACCATCATCATGgtatggtcat ... gtttccttagCTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTGTGGAAAATG
EST: gi|125141984|gb|EL179485.1|EL179485
EST:     TTGGCAAGGAAATGCTTATGCCAAAAGACCCCAATGCCACCATCATCATG                         CTTGGAACAGGAACTGGAATAGCT
genomic: TTGGCAAGGAAATGCTTATGCCAAAAGACCCCAATGCCACCATCATCATGgtatggtcat ... gtttccttagCTTGGAACAGGAACTGGAATAGCT
EST: gi|125166644|gb|EL192345.1|EL192345
EST:     CAAAAGACCCCAATGCCACCATCATCATG                         CTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTGTGGAAAATG
genomic: CAAAAGACCCCAATGCCACCATCATCATGgtatggtcat ... gtttccttagCTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTGTGGAAAATG
EST: gi|125250230|gb|EL264315.1|EL264315
EST:     TGCTTATGCCAAAAGACCCCAATGCCACCATCATCATG                         CTTGGAACAGGAACTGGAATAG
genomic: TGCTTATGCCAAAAGACCCCAATGCCACCATCATCATGgtatggtcat ... gtttccttagCTTGGAACAGGAACTGGAATAG
EST: gi|125311382|gb|EL325467.1|EL325467
EST:     TTGGCAAGGAAATGCTTATGCCAAAAGACCCCAATGCCACCATCATCATG                         CTTGGAACAGGAACTGGAATAGCTCCATTCAGAT
genomic: TTGGCAAGGAAATGCTTATGCCAAAAGACCCCAATGCCACCATCATCATGgtatggtcat ... gtttccttagCTTGGAACAGGAACTGGAATAGCTCCATTCAGAT
EST: gi|124799584|gb|EH889263.1|EH889263
EST:     TGGCAAGGAAATGCTTATGCCAAAAGACCCCAATGCCACCATCAATCATG                         CTTGGAACAGGAACTGGAAT
genomic: TGGCAAGGAAATGCTTATGCCAAAAGACCCCAATGCCACCATCA-TCATGgtatggtcat ... gtttccttagCTTGGAACAGGAACTGGAAT
EST: gi|124777985|gb|EH867928.1|EH867928
EST:     TTGGCAAGGAAATGCTTATGCCAAAAGACCCCAATGCCACCATCATCATG                         CTTGGAACAGGAACTGGAATAGCTCCATTCAG
genomic: TTGGCAAGGAAATGCTTATGCCAAAAGACCCCAATGCCACCATCATCATGgtatggtcat ... gtttccttagCTTGGAACAGGAACTGGAATAGCTCCATTCAG
EST: gi|125293414|gb|EL307499.1|EL307499
EST:     TTGGCAAGGAAATGCTTATGCCAAAAGACCCCAATGCCACCATCATCATG                         CTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTG
genomic: TTGGCAAGGAAATGCTTATGCCAAAAGACCCCAATGCCACCATCATCATGgtatggtcat ... gtttccttagCTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTG
EST: gi|124747486|gb|EH837616.1|EH837616
EST:     ACCCCAATGCCACCATCATCATG                         CTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTGTGGAAAATG
genomic: ACCCCAATGCCACCATCATCATGgtatggtcat ... gtttccttagCTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTGTGGAAAATG
EST: gi|125050122|gb|EL122391.1|EL122391
EST:     GCCACCATCATCATG                         CTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTGTGGAAAATG
genomic: GCCACCATCATCATGgtatggtcat ... gtttccttagCTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTGTGGAAAATG
EST: gi|125280996|gb|EL295081.1|EL295081
EST:     TGGCAAGGAAATGCTTATGCCAAAAGACCCCAATGCCACCATCATCATG                         CTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTGTGGAAAA
genomic: TGGCAAGGAAATGCTTATGCCAAAAGACCCCAATGCCACCATCATCATGgtatggtcat ... gtttccttagCTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTGTGGAAAA
EST: gi|116446281|gb|EG488873.1|EG488873
EST:     TTGGCAAGGAAATGCTTATGCCAAAAGACCCCAATGCCACCATCATCATG                         CTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTGTGGAAAATG
genomic: TTGGCAAGGAAATGCTTATGCCAAAAGACCCCAATGCCACCATCATCATGgtatggtcat ... gtttccttagCTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTGTGGAAAATG
EST: gi|125231153|gb|EL245238.1|EL245238
EST:     TTGGCAAGGAAATGCTTATGCCAAAAGACCCCAATGCCACCATCATCATG                         CTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTT
genomic: TTGGCAAGGAAATGCTTATGCCAAAAGACCCCAATGCCACCATCATCATGgtatggtcat ... gtttccttagCTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTT
EST: gi|124996233|gb|EL068502.1|EL068502
EST:     TAGGCAAGGAAATGCTTATGCCAAAAGACCCCAATGCCACCATCATCATG                         CTTGGAACAGG
genomic: T-GGCAAGGAAATGCTTATGCCAAAAGACCCCAATGCCACCATCATCATGgtatggtcat ... gtttccttagCTTGGAACAGG
EST: gi|125270067|gb|EL284152.1|EL284152
EST:     ATGCTTATGCCAAAAGACCCCAATGCCACCATCATCATG                         CTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTGTGGAAAATG
genomic: ATGCTTATGCCAAAAGACCCCAATGCCACCATCATCATGgtatggtcat ... gtttccttagCTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTGTGGAAAATG
EST: gi|124980640|gb|EL053578.1|EL053578
EST:     CACCATCATCATG                         CTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTGTGGAAAATG
genomic: CACCATCATCATGgtatggtcat ... gtttccttagCTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTGTGGAAAATG
EST: gi|125292334|gb|EL306419.1|EL306419
EST:     TTGGCAAGGAAATGCTTATGCCAAAAGACCCCAATGCCACCATCATCATG                         CTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTGTGGA
genomic: TTGGCAAGGAAATGCTTATGCCAAAAGACCCCAATGCCACCATCATCATGgtatggtcat ... gtttccttagCTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTGTGGA
EST: gi|125067468|gb|EL133963.1|EL133963
EST:     ACCCCAATGCCACCATCATCATG                         CTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTGTGGAAAATG
genomic: ACCCCAATGCCACCATCATCATGgtatggtcat ... gtttccttagCTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTGTGGAAAATG
EST: gi|125301850|gb|EL315935.1|EL315935
EST:     TTGGCAAGGAAATGCTTATGCCAAAAGACCCCAATGCCACCATCATCATG                         CTTGGAACAGGAA
genomic: TTGGCAAGGAAATGCTTATGCCAAAAGACCCCAATGCCACCATCATCATGgtatggtcat ... gtttccttagCTTGGAACAGGAA
EST: gi|125087573|gb|EL146651.1|EL146651
EST:     TGGCAAGGAAATGCTTATGCCAAAAGACCCCAATGCCACCATCATCAATG                         CTTGGAACAGGAACTG
genomic: TGGCAAGGAAATGCTTATGCCAAAAGACCCCAATGCCACCATCATCA-TGgtatggtcat ... gtttccttagCTTGGAACAGGAACTG
EST: gi|125086813|gb|EL146162.1|EL146162
EST:     ACCCCAATGCCACCATCATCATG                         CTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTGTAGGAAAAT
genomic: ACCCCAATGCCACCATCATCATGgtatggtcat ... gtttccttagCTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTGT-GGAAAAT
EST: gi|124857232|gb|EH941669.1|EH941669
EST:     TTGGCAAGGAAATGCTTATGCCAAAAGACCCCAATGCCACCATCATCATG                         CTTGGAACAGGAACTGGAA
genomic: TTGGCAAGGAAATGCTTATGCCAAAAGACCCCAATGCCACCATCATCATGgtatggtcat ... gtttccttagCTTGGAACAGGAACTGGAA
EST: gi|47828632|gb|CK118316.1|CK118316
EST:     AAGACCCCAATGCCACCATCATCATG                         CTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTGTGGAAAATG
genomic: AAGACCCCAATGCCACCATCATCATGgtatggtcat ... gtttccttagCTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTGTGGAAAATG
EST: gi|124927030|gb|EL004803.1|EL004803
EST:     TGCCAAAAGACCCCAATGCCACCATCATCATG                         CTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTGTGGAAAATG
genomic: TGCCAAAAGACCCCAATGCCACCATCATCATGgtatggtcat ... gtttccttagCTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTGTGGAAAATG
EST: gi|125212479|gb|EL227433.1|EL227433
EST:     TGCTTATGCCAAAAGACCCCAATGCCACCATCATCATG                         CTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTGTGGAAAATG
genomic: TGCTTATGCCAAAAGACCCCAATGCCACCATCATCATGgtatggtcat ... gtttccttagCTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTGTGGAAAATG
EST: gi|124998530|gb|EL070799.1|EL070799
EST:     TTGGCAAGGAAATGCTTATGCCAAAAGACCCCAATGCCACCATCATCATG                         CTTGGAACAGGAACTGGAATAGCTCCATTCAGA
genomic: TTGGCAAGGAAATGCTTATGCCAAAAGACCCCAATGCCACCATCATCATGgtatggtcat ... gtttccttagCTTGGAACAGGAACTGGAATAGCTCCATTCAGA
EST: gi|124780200|gb|EH870143.1|EH870143
EST:     CCCCAATGCCACCATCATCATG                         CTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTGTGGAAAATG
genomic: CCCCAATGCCACCATCATCATGgtatggtcat ... gtttccttagCTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTGTGGAAAATG
EST: gi|125026401|gb|EL098670.1|EL098670
EST:     TTGGCAAGGAAATGCTTATGCCAAAAGACCCCAATGCCACCATCATCATG                         CTTGGAACAGGA
genomic: TTGGCAAGGAAATGCTTATGCCAAAAGACCCCAATGCCACCATCATCATGgtatggtcat ... gtttccttagCTTGGAACAGGA
EST: gi|125089369|gb|EL147762.1|EL147762
EST:     CCAAAAGACCCCAATGCCACCATCATCATG                         CTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTGTGGAAAATG
genomic: CCAAAAGACCCCAATGCCACCATCATCATGgtatggtcat ... gtttccttagCTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTGTGGAAAATG
EST: gi|86051160|gb|DR346915.1|DR346915
EST:     TTGGCAAGGAAATGCTTATGCCAAAAGACCCCAATGCCACCATCATCATG                         CTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTGTGGAAAATG
genomic: TTGGCAAGGAAATGCTTATGCCAAAAGACCCCAATGCCACCATCATCATGgtatggtcat ... gtttccttagCTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTGTGGAAAATG
EST: gi|125287417|gb|EL301502.1|EL301502
EST:     ACCCCAATGCCACCATCATCATG                         CTTGGAACAGGAACTGGAATAGCTCCATTCAGATCTATTTTTGTGGAAAAT
genomic: ACCCCAATGCCACCATCATCATGgtatggtcat ... gtttccttagCTTGGAACAGGAACTGGAATAGCTCCATTCAGATC-ATTTTTGTGGAAAAT
EST: gi|125317339|gb|EL331424.1|EL331424
EST:     AAATGCTTATGCCAAAAGACCCCAATGCCACCATCATCATG                         CTTGGAACAGGAACTGGAATAGCTCCATTCAGATCTATTTTTGTGGAAAAT
genomic: AAATGCTTATGCCAAAAGACCCCAATGCCACCATCATCATGgtatggtcat ... gtttccttagCTTGGAACAGGAACTGGAATAGCTCCATTCAGATC-ATTTTTGTGGAAAAT
EST: gi|86051158|gb|DR346913.1|DR346913
EST:     TTGGCAAGGAAATGCTTATGCCAAAAGACCCCAATGCCACCATCATCATG                         CTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTGTGGAAAATG
genomic: TTGGCAAGGAAATGCTTATGCCAAAAGACCCCAATGCCACCATCATCATGgtatggtcat ... gtttccttagCTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTGTGGAAAATG
EST: gi|124750480|gb|EH840610.1|EH840610
EST:     AAGGAAATGCTTATGCCAAAAGACCCCAATGCCACCATCATCATG                         CTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTGTGGAAAATG
genomic: AAGGAAATGCTTATGCCAAAAGACCCCAATGCCACCATCATCATGgtatggtcat ... gtttccttagCTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTGTGGAAAATG
EST: gi|86078472|gb|DR374229.1|DR374229
EST:     TTGGCAAGGAAATGCTTATGCCAAAAGACCCCAATGCCACCATCATCATG                         CTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTGTGGAAAATG
genomic: TTGGCAAGGAAATGCTTATGCCAAAAGACCCCAATGCCACCATCATCATGgtatggtcat ... gtttccttagCTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTGTGGAAAATG
EST: gi|125274009|gb|EL288094.1|EL288094
EST:     CCAAAAGACCCCAATGCCACCATCATCATG                         CTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTGTGGAAAATG
genomic: CCAAAAGACCCCAATGCCACCATCATCATGgtatggtcat ... gtttccttagCTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTGTGGAAAATG
EST: gi|47829213|gb|CK118897.1|CK118897
EST:     TTGGCAAGGAAATGCTTATGCCAAAAGACCCCAATGCCACCATCATCATG                         CTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTGTGGAAAATG
genomic: TTGGCAAGGAAATGCTTATGCCAAAAGACCCCAATGCCACCATCATCATGgtatggtcat ... gtttccttagCTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTGTGGAAAATG
EST: gi|124944208|gb|EL020330.1|EL020330
EST:     CCACCATCATCATG                         CTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTGTGGAAAATG
genomic: CCACCATCATCATGgtatggtcat ... gtttccttagCTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTGTGGAAAATG
EST: gi|125238788|gb|EL252873.1|EL252873
EST:     AATGCCACCATCATCATG                         CTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTGTGGAAAATG
genomic: AATGCCACCATCATCATGgtatggtcat ... gtttccttagCTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTGTGGAAAATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagtggtatatagtcaacacttgtagtgattacttctgcttttctgtttccttagCTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAG
                             ttacttctgcttttct  CT-rich tract
      tatatagt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatggtcatatattggcgtgctcacttagattagagagcagaatttagtggtatatagtcaacacttgtagtgattacttctgcttttctgtttccttagCTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA