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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaatgaaatgaaatctaaatatatattcgctttctttcgagttccaaaatataatgcaatttctgattgaatatgaatgttttcagGGATTCTATGTAGGAAACGGAATAGATACTAATTCTCTCGGTTTTTCGGAAACCATGAATCCAG

Basic information

species Arabidopsis thaliana
transcript AT5G65210.3
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125313417|gb|EL327502.1|EL327502
EST:     GTTGAAGCTAATTCAATTAGAGCAAGAACTCGATCGTGCTAGACAACAG                         GGATTCTATGTAGGAAACGGAATAGATACTAATTCTCTCGGTTTTTCGGAA
genomic: GTTGAAGCTAATTCAATTAGAGCAAGAACTCGATCGTGCTAGACAACAGgttaatgaaa ... atgttttcagGGATTCTATGTAGGAAACGGAATAGATACTAATTCTCTCGGTTTTTCGGAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctttcgagttccaaaatataatgcaatttctgattgaatatgaatgttttcagGGATTCTATGTAGGAAACGGAATAGATACTAATTCTCTCGGTTTTTCGGAAACCATGAATCCAG
                             ttctgat  putative branch site (score: 3)
                                              tgttttc  putative PPT
              aaaatataatgcaatt  TA-rich tract