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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattattcttataggatcttctcacatatcccaaagaattaaagtaaaatcttcaagagcatagcttaatgttaactatttgtagAGCTGTGCAAACGCTGTGAATGGCGATTGGGTTGTTACTGAGGAGTGTGTTGCAGTACAGTATGAGAAACCGATGAATCTTGATCATGCTAGCTTCTTCA

Basic information

species Arabidopsis thaliana
transcript AT5G64830.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86076301|gb|DR372058.1|DR372058
EST:     CATTGGATAATTGGGATTGGATGACACTTATTGTCTACACTTGTTCCAAG                         AGCTGTGCAAACGCTGTGAATGGCGATTGGGTTGTTACTGAGGAGTGTGTT
genomic: CATTGGATAATTGGGATTGGATGACACTTATTGTCTACACTTGTTCCAAGgtattattct ... ctatttgtagAGCTGTGCAAACGCTGTGAATGGCGATTGGGTTGTTACTGAGGAGTGTGTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccaaagaattaaagtaaaatcttcaagagcatagcttaatgttaactatttgtagAGCTGTGCAAACGCTGTGAATGGCGATTGGGTTGTTACTGAGGAGTGTGTTGCAGTACAGTATGAGAAACCGATGAATCTTGATCATGCTAGCTTCTTCA
                                       tgttaac  putative branch site (score: 2)
      aattaaagtaaaatct  TA-rich tract