1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaaatatcttcattttatcatctccatcccaaagcaagttacagacttattgatccatcctgttggatctgttattgttacagATGGAGGAGCTGCTCAGGCCGAGGGAGGTTCAGGCAACTGAGGCGTAGAGAGACAGAGAGATGTATGAAAACTCTTGTGTAAGAAGTCTGTTATAATCGG
species | Arabidopsis thaliana |
transcript | AT5G64130.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CCATGTGCTCCATCTGAGGGTGGTGAAG ATGGAGGAGCTGCTCAGGCCGAGGGAGGTTCAGGCAACTGAGGCGTAGAGAEST: gi|47828491|gb|CK118175.1|CK118175
genomic: CCATGTGCTCCATCTGAGGGTGGTGAAGgtaaatatct ... attgttacagATGGAGGAGCTGCTCAGGCCGAGGGAGGTTCAGGCAACTGAGGCGTAGAGA
EST: GCAGACACGTTACAGGAAGTCTCCATGTGCTCCATCTGAGGGTGGTGAAG ATGGAGGAGCTGCTCAGGCCGAGGGAGGTTCAGGCAACTGAGGCGTAGAGAEST: gi|164033470|gb|ES126056.1|ES126056
genomic: GCAGACACGTTACAGGAAGTCTCCATGTGCTCCATCTGAGGGTGGTGAAGgtaaatatct ... attgttacagATGGAGGAGCTGCTCAGGCCGAGGGAGGTTCAGGCAACTGAGGCGTAGAGA
EST: AGGAAGTCTCCATGTGCTCCATCTGAGGGTGGTGAAG ATGGAGGAGCTGCTCAGGCCGAGGGAGGTTCAGGCAACTGAGGCGTAEST: gi|124789979|gb|EH879658.1|EH879658
genomic: AGGAAGTCTCCATGTGCTCCATCTGAGGGTGGTGAAGgtaaatatct ... attgttacagATGGAGGAGCTGCTCAGGCCGAGGGAGGTTCAGGCAACTGAGGCGTA
EST: GCAGACACGTTACAGGAAGTCTCCATGTGCTCCATCTGAGGGTGGTGAAG ATGGAGGAGCTGCTCAGGEST: gi|164061271|gb|ES081387.1|ES081387
genomic: GCAGACACGTTACAGGAAGTCTCCATGTGCTCCATCTGAGGGTGGTGAAGgtaaatatct ... attgttacagATGGAGGAGCTGCTCAGG
EST: AAGTCTCCATGTGCTCCATCTGAGGGTGGTGAAG ATGGAGGAGCTGCTCAGGCCGAGGGAGGTTCAGGCAACTGAGGCGTAGAGAEST: gi|125139823|gb|EL178390.1|EL178390
genomic: AAGTCTCCATGTGCTCCATCTGAGGGTGGTGAAGgtaaatatct ... attgttacagATGGAGGAGCTGCTCAGGCCGAGGGAGGTTCAGGCAACTGAGGCGTAGAGA
EST: TCCATCTGAGGGTGGTGAAG ATGGAGGAGCTGCTCAGGCCGAGGGAGGTTCAGGCAACTGAGGCGTAGAGAEST: gi|164232337|gb|ES172346.1|ES172346
genomic: TCCATCTGAGGGTGGTGAAGgtaaatatct ... attgttacagATGGAGGAGCTGCTCAGGCCGAGGGAGGTTCAGGCAACTGAGGCGTAGAGA
EST: GCAGACACGTTACAGGAAGTCTCCATGTGCTCCATCTGAGGGTTGTGAAG ATGGAGGAGCTGCTCAGGCCGAGGGEST: gi|164019035|gb|ES081774.1|ES081774
genomic: GCAGACACGTTACAGGAAGTCTCCATGTGCTCCATCTGAGGGTGGTGAAGgtaaatatct ... attgttacagATGGAGGAGCTGCTCAGGCCGAGGG
EST: AAGTCTCCATGTGCTCCATCTGAGGGTTGGTGAAG ATGGAGGAGCTGCTCAGGCCGAGGGAGGTTCAGGCAACTGAGGCGTAGAG
genomic: AAGTCTCCATGTGCTCCATCTGAGGG-TGGTGAAGgtaaatatct ... attgttacagATGGAGGAGCTGCTCAGGCCGAGGGAGGTTCAGGCAACTGAGGCGTAGAG
ccaaagcaagttacagacttattgatccatcctgttggatctgttattgttacagATGGAGGAGCTGCTCAGGCCGAGGGAGGTTCAGGCAACTGAGGCGTAGAGAGACAGAGAGATGTATGAAAACTCTTGTGTAAGAAGTCTGTTATAATCGG
tattgat putative branch site (score: 3)
ttattgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatatcttcattttatcatctccatcccaaagcaagttacagacttattgatccatcctgttggatctgttattgttacagATGGAGGAGCTGCTCAGGCCGAGGGAGGTTCAGGCAACTGAGGCGTAGAGAGACAGAGAGATGTATGAAAACTCTTGTGTAAGAAGTCTGTTATAATCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT