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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgtccctttcaaatatttgtggctatttttaatgttttaagctttatagtttgctgctatgttcattttctctctatttgttgttgagaccttttcgcttgcttctactagATCTCTAACAGGTTTCTTAAAAGAGACCAGAAGACTATTGATCTTGTTGGTAATGATAAAATGAAGGCCAGTAATAGTGTTCGACACATTGCTATTCCTT

Basic information

species Arabidopsis thaliana
transcript AT5G62190.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124970486|gb|EL044314.1|EL044314
EST:     AAGTCCAGACTCTTCTCTTCAGTGCTACTTTGCCATCATGGGTGAAAAAT                         ATCTCTAACAGGTTTCTTAAAAGAGACCAGAAGACTATTGATCTTGTTGGT
genomic: AAGTCCAGACTCTTCTCTTCAGTGCTACTTTGCCATCATGGGTGAAAAATgtgcgtccct ... cttctactagATCTCTAACAGGTTTCTTAAAAGAGACCAGAAGACTATTGATCTTGTTGGT
EST: gi|124720601|gb|EH812003.1|EH812003
EST:     TGCTACTTTGCCATCATGGGTGAAAAAT                         ATCTCTAACAGGTTTCTTAAAAGAGACCAGAAGACTATTGATCTTGTTGGT
genomic: TGCTACTTTGCCATCATGGGTGAAAAATgtgcgtccct ... cttctactagATCTCTAACAGGTTTCTTAAAAGAGACCAGAAGACTATTGATCTTGTTGGT
EST: gi|47828150|gb|CK117834.1|CK117834
EST:     AAGTCCAGACTCTTCTCTTCAGTGCTACTTTGCCATCATGGGTGAAAAAT                         ATCTCTAACAGGTTTCTTAAAAGAGACCAGAAGACTATTGATCTTGTTGGT
genomic: AAGTCCAGACTCTTCTCTTCAGTGCTACTTTGCCATCATGGGTGAAAAATgtgcgtccct ... cttctactagATCTCTAACAGGTTTCTTAAAAGAGACCAGAAGACTATTGATCTTGTTGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctatgttcattttctctctatttgttgttgagaccttttcgcttgcttctactagATCTCTAACAGGTTTCTTAAAAGAGACCAGAAGACTATTGATCTTGTTGGTAATGATAAAATGAAGGCCAGTAATAGTGTTCGACACATTGCTATTCCTT
                                 ccttttcgcttgcttc  CT-rich tract
     ttcatttt  TA-rich tract