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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgaacatagttctagtctaatttagaccgatttaattgatattttgttttgtatcaaagacaaatcattcaaaggaaagaggatatttgggggcaacaatgaaagagttacttctaagaagcctttgtttcttgctaaagCTCATCTTTGTATCTGTGGATCTGGATAATGAGGATTATGGGAAGCCAGTCGCTGAATACTTTGGTGTGTCTGGAAATGGTCCTAAA

Basic information

species Arabidopsis thaliana
transcript AT5G60640.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86064531|gb|DR360288.1|DR360288
EST:     AAAAGGTTCTTACGGAATTTCAAGAAGCAGCGAAATCATTCAAAGGAAAG                         CTCATCTTTGTATCTGTGGATCTGGATAATGAGGATTATGGGAAGCCAGTC
genomic: AAAAGGTTCTTACGGAATTTCAAGAAGCAGCGAAATCATTCAAAGGAAAGgtatgaacat ... cttgctaaagCTCATCTTTGTATCTGTGGATCTGGATAATGAGGATTATGGGAAGCCAGTC
EST: gi|86064530|gb|DR360287.1|DR360287
EST:     AAAAGGTTCTTACGGAATTTCAAGAAGCAGCGAAATCATTCAAAGGAAAG                         CTCATCTTTGTATCTGTGGATCTGGATAATGAGGATTATGGGAAGCCAGTC
genomic: AAAAGGTTCTTACGGAATTTCAAGAAGCAGCGAAATCATTCAAAGGAAAGgtatgaacat ... cttgctaaagCTCATCTTTGTATCTGTGGATCTGGATAATGAGGATTATGGGAAGCCAGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgggggcaacaatgaaagagttacttctaagaagcctttgtttcttgctaaagCTCATCTTTGTATCTGTGGATCTGGATAATGAGGATTATGGGAAGCCAGTCGCTGAATACTTTGGTGTGTCTGGAAATGGTCCTAAA
                                    cctttgtttcttgct  CT-rich tract
            aatgaaa  TA-rich tract