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...ttgtggtacttgataactttgttttgctcttgttggcccaatgttaacttgtttcagtcataaagaaagcgcctgtaacctgtttatacttaatctgcagGAATCTAACAAAAACTTGGATGAAGTTATCGAACTCGCCAAAGAACTCCAAAAG
species | Arabidopsis thaliana |
transcript | AT5G57655.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGTGGTGTTTTCATGACAGAGACATAGCACCTGATGGCACTACACTTGAG GAATCTAACAAAAACTTGGATGAAGTTATCGAACTCGCCAAAGAACTCCAAEST: gi|163971668|gb|ES137878.1|ES137878
genomic: GGTGGTGTTTTCATGACAGAGACATAGCACCTGATGGCACTACACTTGAGgtaactcgag ... taatctgcagGAATCTAACAAAAACTTGGATGAAGTTATCGAACTCGCCAAAGAACTCCAA
EST: ATAGCACCTGATGGCACTACACTTGAG GAATCTAACAAAAACTTGGATGAAGTTATCGAACTCGCCAAAGAACTCCAAEST: gi|301502681|gb|HO208221.1|HO208221
genomic: ATAGCACCTGATGGCACTACACTTGAGgtaactcgag ... taatctgcagGAATCTAACAAAAACTTGGATGAAGTTATCGAACTCGCCAAAGAACTCCAA
EST: G-GGTGTTTTCATGACAGAGACATAGCACCTGATGGCACTACACTTGCAG GAATCTAACAAAAACTTGGATGAAGTTATCGAACTCGCCAAAGAACTCCAEST: gi|301501388|gb|HO206928.1|HO206928
genomic: GTGGTGTTTTCATGACAGAGACATAGCACCTGATGGCACTACACTTG-AGgtaactcgag ... taatctgcagGAATCTAACAAAAACTTGGATGAAGTTATCGAACTCGCCAAAGAACTCCA
EST: GGTGGTGTTTTCATGACAGAGACATAGCACCTGATGGCACTACACTTGAG GAATCTAACAAAAACTTGGATGAAGTTATCGAACTCGCCAAAGAACTCCAA
genomic: GGTGGTGTTTTCATGACAGAGACATAGCACCTGATGGCACTACACTTGAGgtaactcgag ... taatctgcagGAATCTAACAAAAACTTGGATGAAGTTATCGAACTCGCCAAAGAACTCCAA
aacttgtttcagtcataaagaaagcgcctgtaacctgtttatacttaatctgcagGAATCTAACAAAAACTTGGATGAAGTTATCGAACTCGCCAAAGAACTCCAAAAG
tgtttatacttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtggtacttgataactttgttttgctcttgttggcccaatgttaacttgtttcagtcataaagaaagcgcctgtaacctgtttatacttaatctgcagGAATCTAACAAAAACTTGGATGAAGTTATCGAACTCGCCAAAGAACTCCAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - -tgttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaagaaa