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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagcacctagataatgtcatagcagtttagcttaatctcaattacacttgtgttcttagcttcactgacatatatatcgatacagGTTAGTCCAGATTTATATGGCGATAACAACACAAGGCTTTTCACATACTGGACG

Basic information

species Arabidopsis thaliana
transcript AT5G56530.2
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116442545|gb|EG485137.1|EG485137
EST:     TTGGAGGTTCTTTTGGTCAAGATCTCAACAGCATTGAAGCTGGTTGGCAG                         GTTAGTCCAGATTTATATGGCGATAACAACACAAGGCTTTTCACATACTGG
genomic: TTGGAGGTTCTTTTGGTCAAGATCTCAACAGCATTGAAGCTGGTTGGCAGgtaaagcacc ... atcgatacagGTTAGTCCAGATTTATATGGCGATAACAACACAAGGCTTTTCACATACTGG
EST: gi|116431119|gb|EG473711.1|EG473711
EST:     TTGGAGGTTCTTTTGGTCAAGATCTCAACAGCATTGAAGCTGGTTGGCAG                         GTTAGTCCAGATTTATATGGCGATAACAACACAAGGCTTTTCACATACTGG
genomic: TTGGAGGTTCTTTTGGTCAAGATCTCAACAGCATTGAAGCTGGTTGGCAGgtaaagcacc ... atcgatacagGTTAGTCCAGATTTATATGGCGATAACAACACAAGGCTTTTCACATACTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttaatctcaattacacttgtgttcttagcttcactgacatatatatcgatacagGTTAGTCCAGATTTATATGGCGATAACAACACAAGGCTTTTCACATACTGGACG
                                cactgac  putative branch site (score: 2)
                                     acatatatat  TA-rich tract