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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgagaatttatcagcaaaattttctccgtttcttatgaagaaaagtttcaacactaagttcttgcatctttgttctgttttcgtgatccagTTCGCTCGGTCAGAACCTTAAAACAAGTACATATATTTGGGAAATCTGTTTCGCGGTGTTCATTTCTATTGCGGGGCTGGTTTTGTTCTCCTTCTTGATT

Basic information

species Arabidopsis thaliana
transcript AT5G53130.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G53130.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA04G41610.2 (Glycine max), 3'ss of exon 5
gtattgagaatttatcagcaaaattt----tctccgtttcttatgaagaaaagtttcaacactaagttcttgcatctttgt-tctgttttcgt--gatccagTTCGCTCGGTCAGAACCTTAAAACAAGTACATATATTTGGGAAATCTGTTTCGCGGTGTTCATTTCTATTGCGGGGCTGGTTTTGTTCTCCTTCTTGATT
  | |   |  || | || |   |||    | |   ||| || |  || | | ||| | ||     |       ||| | | | |   | | |    | |||||| || ||||||||||||  ||||||||| ||| ||||||||||||| || ||  | |||||||| ||||| ||  |||| || ||  | ||| | |||
--agttgcatgttgttagtatgttttgaattttgattttgttgttgagcatatttttaccaagttatctgacattctgtatatatacctccatctattgcagTTCTCTTGGTCAGAACCTTGCAACAAGTACCTATGTTTGGGAAATCTGCTTTGCAATTTTCATTTCAATTGCTGGTTTGGTGTTATTTGCATTCCTCATT

upper sequence: AT5G53130.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA14G31940.1 (Glycine max), 3'ss of exon 4
-gtattgagaatttatcagcaaaattttctccgtttcttatgaagaaaagtttcaacactaagttcttgcatctttgtt-----ctg--ttttcgtgatccagTTCGCTCGGTCAGAACCTTAAAACAAGTACATATATTTGGGAAATCTGTTTCGCGGTGTTCATTTCTATTGCGGGGCTGGTTTTGTTCTCCTTCTTGATT
   |||   || ||   |||| |||   |    ||  |  |||||  |   |  || | |  ||  ||    ||   ||     |||  |  |  |  | |||||| || |||||||||||   ||||||||| ||| ||||||||||| |||| || || ||||||||| |  | ||  |||| || || || ||| | |||
taaattttaaagttg--agcataatcaccat-attattactgaagttatcatctaatattctgtaattattcctccattgggagctggatgcttttattgcagTTCTCTTGGTCAGAACCTGGCAACAAGTACCTATGTTTGGGAAATCAGTTTTGCAGTTTTCATTTCTGTATCTGGTTTGGTATTATTTTCATTCCTCATT

upper sequence: AT5G53130.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA06G13200.1 (Glycine max), 3'ss of exon 5
gtattgagaatttatcagcaaaatttt--ctccgtttcttatgaagaaa-agtttcaacactaagttcttgcatctttgttctgttttcg----tgatccagTTCGCTCGGTCAGAACCTTAAAACAAGTACATATATTTGGGAAATCTGTTTCGCGGTGTTCATTTCTATTGCGGGGCTGGTTTTGTTCTCCTTCTTGATT
  | |   |  || | || |   |||    |  | || || ||  ||   | |||  |||      |||  |||  |   | | ||        |  | |||||| || ||||||||||||  ||||||||| ||| ||||||||||| | || ||  | |||||||| ||||| || ||||| || ||  | ||| | |||
--agttgcatgttgttagtatgttttgaattttgatttttttgttgagccaatttttacaaagttatctgacattctgtatatattcctccatctattgcagTTCTCTTGGTCAGAACCTTGCAACAAGTACCTATGTTTGGGAAATCAGCTTTGCTATTTTCATTTCAATTGCTGGTCTGGTGTTATTTGCATTCCTCATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaagaaaagtttcaacactaagttcttgcatctttgttctgttttcgtgatccagTTCGCTCGGTCAGAACCTTAAAACAAGTACATATATTTGGGAAATCTGTTTCGCGGTGTTCATTTCTATTGCGGGGCTGGTTTTGTTCTCCTTCTTGATT
                              tctttgttctgttttc  CT-rich tract
     aaagttt  TA-rich tract