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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttgaagttgctgcatgatttcatcaatcagtttatgtcaggcggatataatggtagatgacacaatataacaacctcttttgtttatacttggttttaagtatcctgatgctgatgctgatgccagcgtaccatatctcttagttctgatgcagTCATTATGTGAAGATATTGAAAAGGAGCATCCCTCCATTCAAAATAGCGACATTGTTACTTTCTTCCAAGTTGCTCAGTCCATCACCTCTTTTCAGTTTC

Basic information

species Arabidopsis thaliana
transcript AT5G52910.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G52910.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA20G30420.1 (Glycine max), 3'ss of exon 6
gttttgaagttgctgcatgatttcatcaatcagtttatgtcaggcggatataatggtagatgacacaatataacaacctcttttgtttatacttggttttaagtatcctgatgctgatgctgatgccagcgtaccata----tctcttagttctgatgcagTCATTATGTGAAGATATTGAAAAGGAGCATCCCTCCATTCAAAATAGCGACATTGTTACTTTCTTCCAAGTTGCTCAGTCCATCACCTCTTTTCAGTTTC
                                      ||  |  |  | |  |   |||  | | | | || ||   ||   | | |    |||||||  | | | |  | ||| |   | ||  ||  | |   |     | | | |||| ||||||  ||  |  ||||||||||||||||||| |||||||| |||||||| || ||  |||||  |||||| ||||| ||| | |   |||| ||           
--------------------------------------gtatgatgttttttttttcaga--ataaattgtatcattttcaaatatattgttttggtttccaat-tgcaaaagctaaaagtaatctcactgcaatttgaacctgtatcagTTTTGATGCGATCCATTCGTGAAGATATTGAAAAGGAACATCCCTCAATTCAAAAAAGTGATGTTGTTGTTTTCTTTCAAGTGGCTGAATTTGTCACTTC-----------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtatcctgatgctgatgctgatgccagcgtaccatatctcttagttctgatgcagTCATTATGTGAAGATATTGAAAAGGAGCATCCCTCCATTCAAAATAGCGACATTGTTACTTTCTTCCAAGTTGCTCAGTCCATCACCTCTTTTCAGTTTC
                                            ttctgat  putative branch site (score: 3)