Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtactagtattatctattatatttgaattgaaaactctcactatttttttctttctttgagctaatctttttggtttatatgttttttgtttgatagGTTTGGAGTTTGGATAATCTACAGTGTATACAAACACTCACTGATCATTCATCAGTTGTGATGTCTCTCATTTGCTGGGATCAATTCCTTTTGTCTTGTT

Basic information

species Arabidopsis thaliana
transcript AT5G51980.2
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G51980.2 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA09G27300.1 (Glycine max), 3'ss of exon 5
----------gtaag-----tactagtattatct-attatatttgaattgaaaactctcactatt--tttttctttctttgagctaatctttttggtttatatgttttttgtttgatagGTTTGGAGTTTGGATAATCTACAGTGTATACAAACACTCACTGATCATTCATCAGTTGTGATGTCTCTCATTTGCTGGGATCAATTCCTTTTGTCTTGTT
          |||||     | | |  | | ||| |||  ||  |   |  ||  |    ||| |   ||||  ||  || |  |  |   |||  |  |  || || |||| |   |||| ||||   | || |   | |||||| |||| ||||| || || ||  |||| |||||||||||| |  | |||||||| |||||||||||||||||||
gtaagtttttgtaagctctttgccataaatgtctgattcaatacgtgattcaatttggtgctaataggttttggtttgttaatttggtgcatttcttccaactggttgttgtctttcagGTATGGAACCTTGAAACCTTGCAGTGTTTACAGACACTAACAGAGCACACATCTGTTGTGATGTCTGTTCTCTGCTGGGACCAATTCCTTTTGTCTTGTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttttttctttctttgagctaatctttttggtttatatgttttttgtttgatagGTTTGGAGTTTGGATAATCTACAGTGTATACAAACACTCACTGATCATTCATCAGTTGTGATGTCTCTCATTTGCTGGGATCAATTCCTTTTGTCTTGTT
                 agctaat  putative branch site (score: 3)
                                        ttttttgttt  putative PPT
                                tttatatgttttttgt  TA-rich tract