Sequence
atgc intronic sequence ATGC exonic sequencegtttgtacactcattcttgcttctgtatatgtatattcagcgagcatcgaaattgttgtgtacctttgttaacaaacaacctgcatctgtcacagCTGTATTTGGACATGAAGTTTGTCATATGCTTTGCATCCCAAGGTCGCTACCTATCGAGGAATTTGCACAGGGGAACTAATGAGATAATATCTAAAGCCT
Basic information
species | Arabidopsis thaliana |
transcript | AT5G49830.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT5G49830.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA07G00570.2 (Glycine max), 3'ss of exon 7
gtttgtacactcat--tcttgcttctgtatatgtatattcagcgagcatcg-aaattgttgtgt--acctttgttaacaaacaacctgcatctgtc--acagCTGTATTTGGACATGAAGTTTGTCATATGCTTTGCATCCCAAGGTCGCTACCTATCGAGGAATTTGCACAGGGGAACTAATGAGATAATATCTAAAGCCT
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--cagtgtaataatgattttgctgatgcaaattttacttggttgacccttgtgaactgcaaagttcatcatgaccatataataattttcttacattgtgcagTTCTATTTGGATATGAAGTTTGTCGTATGTTTTGCCTCCCATGGTCGGTACTTGTCTAGGAATTTGCAACGAATTGTCAATGAGATTATAACAAAAGCAA
upper sequence: AT5G49830.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA08G23840.1 (Glycine max), 3'ss of exon 6
-------------------------------------------------------------------------gtttgtacactcattcttgcttctgtatatgtatattcagcgagcatcgaaattgttgtgtac------ctttgttaacaaacaacctgcatctgt----cacagCTGTATTTGGACATGAAGTTTGTCATATGCTTTGCATCCCAAGGTCGCTACCTATCGAGGAATTTGCACAGGGGAACTAATGAGATAATATCTAAAGCCT
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gtatgatattggaatttgtttattatatcattcatgattttcttttaattttggttactggtaactgttataaacccatatgccaaaatagagaagaattgatgcaaattttccacggttgaaccttgtgaaatgcaaagttcattatggccttataattttttcttatattgtgcagTTCTATTTAGATATGAAGTTTGTCGTATGTTTTGCCTCCCATGGTCGGTACTTGTCAAGGAATTTGCAACGAATTGTCAATGAGATCATAACAAAAGCGA
upper sequence: AT5G49830.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: Vv09s0018g01920.t01 (Vitis vinifera), 3'ss of exon 5
gtttgtacactcattcttgcttctgtatatgtatattcagcgagcatcgaaattgttgtgtacctttgttaacaaacaacctgcatctgtcacagCTGTATTTGGACATGAAGTTTGTCATATGCTTTGCATCCCAAGGTCGCTACCTATCGAGGAATTTGCACAGGGGAACTAATGAGATAATATCTAAAGCCT
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gtttttgaaattgatccc-cattgatctgcatctgctctgtttctgtcgagttcctaaaactgacctaata-ttcacttgctaaatcatgtgtagTTCTATTTGGACATGAAGTTCGTCATCTGCTTTGCTTCACAAGGTCGCTACTTATCACGGAATTTGAACCGAGTGGTCAATGAGATCATATCTAAAGCTAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86087532|gb|DR383291.1|DR383291EST: ATGACATTGAGGAAGGTCCTCGACCTTTGGGACCTCTTGGCCTACGGCAG CTGTATTTGGACATGAAGTTTGTCATATGCTTTGCATCCCAAGGTCGCTAC
genomic: ATGACATTGAGGAAGGTCCTCGACCTTTGGGACCTCTTGGCCTACGGCAGgtttgtacac ... tctgtcacagCTGTATTTGGACATGAAGTTTGTCATATGCTTTGCATCCCAAGGTCGCTAC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cgagcatcgaaattgttgtgtacctttgttaacaaacaacctgcatctgtcacagCTGTATTTGGACATGAAGTTTGTCATATGCTTTGCATCCCAAGGTCGCTACCTATCGAGGAATTTGCACAGGGGAACTAATGAGATAATATCTAAAGCCT
tgttaac putative branch site (score: 2)
aaattgtt TA-rich tract