1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaatatcttcttcttctgtttttttatttttcaaatcatgagagtacctccccttcaatatgcttttttttgacatatcgacgacaacggttcttatatctttgcagATCCTGATGAGTACAACAAATATGAACTAAAGGATATATTAGGAATGGAGATGAAGGTGTTAGAAGCACTAGATTATTATCTGGTTGTGTTTCACCCTTA
species | Arabidopsis thaliana |
transcript | AT5G48640.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGAAAGCATAGTGCAGGCCAGGAATCTTGTTTTTTACATCAAAAGATTGT ATCCTGATGAGTACAACAAATATGAACTAAAGGATATATTAGGAATGGAGAEST: gi|164181775|gb|ES143761.1|ES143761
genomic: AGAAAGCATAGTGCAGGCCAGGAATCTTGTTTTTTACATCAAAAGATTGTgtaatatctt ... atctttgcagATCCTGATGAGTACAACAAATATGAACTAAAGGATATATTAGGAATGGAGA
EST: AGAAAGCATAGTGCAGGCCAGGAATCTTGTTTTTTACATCAAAAGATTGT ATCCTGATGAGTACAACAAATATGAACTAAAGGATAEST: gi|163973880|gb|ES147460.1|ES147460
genomic: AGAAAGCATAGTGCAGGCCAGGAATCTTGTTTTTTACATCAAAAGATTGTgtaatatctt ... atctttgcagATCCTGATGAGTACAACAAATATGAACTAAAGGATA
EST: TTTACATCAAAAGATTGT ATCCTGATGAGTACAACAAATATGAACTAAAGGATATATTAGGAATGGAGAEST: gi|86086425|gb|DR382184.1|DR382184
genomic: TTTACATCAAAAGATTGTgtaatatctt ... atctttgcagATCCTGATGAGTACAACAAATATGAACTAAAGGATATATTAGGAATGGAGA
EST: AGAAAGCATAGTGCAGGCCAGGAATCTTGTTTTTTACATCAAAAGATTGT ATCCTGATGAGTACAACAAATATGAACTAAAGGATATATTAGGAATGGAGA
genomic: AGAAAGCATAGTGCAGGCCAGGAATCTTGTTTTTTACATCAAAAGATTGTgtaatatctt ... atctttgcagATCCTGATGAGTACAACAAATATGAACTAAAGGATATATTAGGAATGGAGA
cttcaatatgcttttttttgacatatcgacgacaacggttcttatatctttgcagATCCTGATGAGTACAACAAATATGAACTAAAGGATATATTAGGAATGGAGATGAAGGTGTTAGAAGCACTAGATTATTATCTGGTTGTGTTTCACCCTTA
ttttgac putative branch site (score: 3)
tatcttt putative PPT
ttttttttgacatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatatcttcttcttctgtttttttatttttcaaatcatgagagtacctccccttcaatatgcttttttttgacatatcgacgacaacggttcttatatctttgcagATCCTGATGAGTACAACAAATATGAACTAAAGGATATATTAGGAATGGAGATGAAGGTGTTAGAAGCACTAGATTATTATCTGGTTGTGTTTCACCCTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC