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gtacaatcaaatcgcttctgttcgatatatgctttacggacatacgaattcaccaatgtcttatgaattttgggcacagAACTGCAAAATTCATCACTCTGTGGTTGGACTCCGTTCCTGCATATCAGAAGGTGCTATTATTGAAGATTCGTTATTAATGGGAGCTGATTATTACGAG
species | Arabidopsis thaliana |
transcript | AT5G48300.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTGATGCTGATGTTACTGACAGTGTCATCGGAGAGGGCTGTGTTATCAAG AACTGCAAAATTCATCACTCTGTGGTTGGACTCCGTTCCTGCATATCAGAAEST: gi|125145418|gb|EL180615.1|EL180615
genomic: TTGATGCTGATGTTACTGACAGTGTCATCGGAGAGGGCTGTGTTATCAAGgtacaatcaa ... ttgggcacagAACTGCAAAATTCATCACTCTGTGGTTGGACTCCGTTCCTGCATATCAGAA
EST: TGTTACTGACAGTGTCATCGGAGAGGGCTGTGTTATCAAG AACTGCAAAATTCATCACTCTGTGGTTGGACTCCGTTCCTGCATATCEST: gi|125238029|gb|EL252114.1|EL252114
genomic: TGTTACTGACAGTGTCATCGGAGAGGGCTGTGTTATCAAGgtacaatcaa ... ttgggcacagAACTGCAAAATTCATCACTCTGTGGTTGGACTCCGTTCCTGCATATC
EST: TGTTACTGACAGTGTCATCGGAGAGGGCTGTGTTATCAAG AACTGCAAAATTCATCACTCTGTGGTTGGACTCCGTTCCTGCATATEST: gi|86084119|gb|DR379878.1|DR379878
genomic: TGTTACTGACAGTGTCATCGGAGAGGGCTGTGTTATCAAGgtacaatcaa ... ttgggcacagAACTGCAAAATTCATCACTCTGTGGTTGGACTCCGTTCCTGCATAT
EST: TTGATGCTGATGTTACTGACAGTGTCATCGGAGAGGGCTGTGTTATCAAG AACTGCAAAATTCATCACTCTGTGGTTGGACTCCGTTCCTGCATATCAGAA
genomic: TTGATGCTGATGTTACTGACAGTGTCATCGGAGAGGGCTGTGTTATCAAGgtacaatcaa ... ttgggcacagAACTGCAAAATTCATCACTCTGTGGTTGGACTCCGTTCCTGCATATCAGAA
atatatgctttacggacatacgaattcaccaatgtcttatgaattttgggcacagAACTGCAAAATTCATCACTCTGTGGTTGGACTCCGTTCCTGCATATCAGAAGGTGCTATTATTGAAGATTCGTTATTAATGGGAGCTGATTATTACGAG
ttatgaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacaatcaaatcgcttctgttcgatatatgctttacggacatacgaattcaccaatgtcttatgaattttgggcacagAACTGCAAAATTCATCACTCTGTGGTTGGACTCCGTTCCTGCATATCAGAAGGTGCTATTATTGAAGATTCGTTATTAATGGGAGCTGATTATTACGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT