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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttccaatctcctattattcttgtgttggcttgcatattatccaattttagtttgtcgtagtcttactttatttctgaacatcttcagGGTTTTACAACATTAATGGATGGACGTCGTACGGAGGACCTTCAGAGGATGCAAACCTTGTTTTCTAGGGTCAATGCACTTGAGTCTCTGAGGCAGGCGC

Basic information

species Arabidopsis thaliana
transcript AT5G46210.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125042624|gb|EL114893.1|EL114893
EST:     TTCTCGAACGTCATATACTTGTTGTTCTTGAAAAG                         GGTTTTACAACATTAATGGATGGACGTCGTACGGAGGACCTTCAGAGGATG
genomic: TTCTCGAACGTCATATACTTGTTGTTCTTGAAAAGgttccaatct ... acatcttcagGGTTTTACAACATTAATGGATGGACGTCGTACGGAGGACCTTCAGAGGATG
EST: gi|164064728|gb|ES202702.1|ES202702
EST:     GTTCTTGAAAAG                         GGTTTTACAACATTAATGGATGGACGTCGTACGGAGGACCTTCAGAGGATG
genomic: GTTCTTGAAAAGgttccaatct ... acatcttcagGGTTTTACAACATTAATGGATGGACGTCGTACGGAGGACCTTCAGAGGATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catattatccaattttagtttgtcgtagtcttactttatttctgaacatcttcagGGTTTTACAACATTAATGGATGGACGTCGTACGGAGGACCTTCAGAGGATGCAAACCTTGTTTTCTAGGGTCAATGCACTTGAGTCTCTGAGGCAGGCGC
                           gtcttac  putative branch site (score: 3)
                                              catcttc  putative PPT
          aattttagttt  TA-rich tract