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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtcttactctacctaacattacagctccaggaaatttctatttcgtataatgtttcttagactaatgtttttttatttatgaaaaacttgaatagGGATCTATCTTTCAACAATCTAAGCGGACCAACTCCGAATATATCAGCAAAAGATTACAG

Basic information

species Arabidopsis thaliana
transcript AT5G45780.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125040583|gb|EL112852.1|EL112852
EST:     TCTGGGCAAGTCCCTCACCTCGTCGCTGGCCTCTCAGGTCTTTCTTTCTT                         GGATCTATCTTTCAACAATCTAAGCGGACCAACTCCGAAT
genomic: TCTGGGCAAGTCCCTCACCTCGTCGCTGGCCTCTCAGGTCTTTCTTTCTTgtatgtctta ... acttgaatagGGATCTATCTTTCAACAATCTAAGCGGACCAACTCCGAAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcgtataatgtttcttagactaatgtttttttatttatgaaaaacttgaatagGGATCTATCTTTCAACAATCTAAGCGGACCAACTCCGAATATATCAGCAAAAGATTACAG
                   gactaat  putative branch site (score: 2)
     tataatgtttcttaga  TA-rich tract