1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
...aacacaggcatgatgtaaatcttaggcaaaaggtgtggccgttttggccatggatatactttttttgggtagattattaatgaactagcgaactccacagGTGGTGCCATGACATTGGAAGGGAACAGGCTGCCAACAAACCATTGCTAAAGACAGTTTTCCAG
species | Arabidopsis thaliana |
transcript | AT5G45160.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAAGTGCCCTGTTTGCTATTAGCTGTTGCCGATATTGTACTGATAAACAT GTGGTGCCATGACATTGGAAGGGAACAGGCTGCCEST: gi|125027041|gb|EL099310.1|EL099310
genomic: AAAGTGCCCTGTTTGCTA-TAGCTGTTGCCGATATTGTACTGATAAACATgtgagtatgt ... aactccacagGTGGTGCCATGACATTGGAAGGGAACAGGCTGCC
EST: CAAAGTGCCCTGTTTGCTATAGCTGTTGCCGATATTGTACTGATAAACAT GTGGTGCCATGACATTGGAAGGGAACAGGCTGCCAACA
genomic: CAAAGTGCCCTGTTTGCTATAGCTGTTGCCGATATTGTACTGATAAACATgtgagtatgt ... aactccacagGTGGTGCCATGACATTGGAAGGGAACAGGCTGCCAACA
ggccatggatatactttttttgggtagattattaatgaactagcgaactccacagGTGGTGCCATGACATTGGAAGGGAACAGGCTGCCAACAAACCATTGCTAAAGACAGTTTTCCAG
tattaat putative branch site (score: 2)
tagattattaatgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacacaggcatgatgtaaatcttaggcaaaaggtgtggccgttttggccatggatatactttttttgggtagattattaatgaactagcgaactccacagGTGGTGCCATGACATTGGAAGGGAACAGGCTGCCAACAAACCATTGCTAAAGACAGTTTTCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
aacacag
- - - - - - - - - - - - ggcaaaa
- - - - - - - - - - - - - - - -ggtgtgg
- - - - - - - - - - - - - - - - - - - - gttttgg
- - - - - - - - - - - - - - - - - - - - - - - -ccatgga