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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtttaaacaacaattttacacttattcaaatttatatcttgtctaaagagtaaggatactattttgaataccattcagGGATGTGGCTGAGATACACAATTTTTTTCCTGAGATTGCTATGGAATTTGGAAATGGTCAGAAACTGATTCTTTCTCCCGAGAACTACTTATTCAGG

Basic information

species Arabidopsis thaliana
transcript AT5G43100.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86077119|gb|DR372876.1|DR372876
EST:     CATGGTCCAGACCCAAATTATGATGATGTTTGTTTCTCTGGCGCTGGAAG                         GGATGTGGCTGAGATACACAANNNNNNNCCTGAGATTGCTATGGAATTTGG
genomic: CATGGTCCAGACCCAAATTATGATGATGTTTGTTTCTCTGGCGCTGGAAGgtttgtttaa ... taccattcagGGATGTGGCTGAGATACACAATTTTTTTCCTGAGATTGCTATGGAATTTGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attcaaatttatatcttgtctaaagagtaaggatactattttgaataccattcagGGATGTGGCTGAGATACACAATTTTTTTCCTGAGATTGCTATGGAATTTGGAAATGGTCAGAAACTGATTCTTTCTCCCGAGAACTACTTATTCAGG
                 gtctaaa  putative branch site (score: 3)
                                atactattttgaata  TA-rich tract