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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcaaccaaaccgtagtctcttcatacgaaccaactctcaagagggggtatgttaacttgagtttttaaggcttttgggatattgtgcagGTTTTTGCTGAGCTTAAAGATTTTGCAACTGAGATTCAGTCAGCTGGATTGGTGTCACCAACACTCATCATCATAGGGAAAGTCGTTGAGCTCTCACCTT

Basic information

species Arabidopsis thaliana
transcript AT5G40850.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124935379|gb|EL012369.1|EL012369
EST:     TACACCAGCTGTTGCGGTTGAACGTGGAACCACTCCTCTACAGCGTACA                         GTTTTTGCTGAGCTTAAAGATTTTGCAACTGAGATTCAGTCAGCTGGATTG
genomic: TACACCAGCTGTTGCGGTTGAACGTGGAACCACTCCTCTACAGCGTACAgtaagcaacc ... tattgtgcagGTTTTTGCTGAGCTTAAAGATTTTGCAACTGAGATTCAGTCAGCTGGATTG
EST: gi|116471006|gb|EG513598.1|EG513598
EST:     ATACACCAGCTGTTGCGGTTGAACGTGGAACCACTCCTCTACAGCGTACA                         GTTTTTGCTGAGCTTAAAGATTTTGCAACTGAGATTCAGTCAGCTGGATTG
genomic: ATACACCAGCTGTTGCGGTTGAACGTGGAACCACTCCTCTACAGCGTACAgtaagcaacc ... tattgtgcagGTTTTTGCTGAGCTTAAAGATTTTGCAACTGAGATTCAGTCAGCTGGATTG
EST: gi|124915684|gb|EH989558.1|EH989558
EST:     CTCCTCTACAGCGTACA                         GTTTTTGCTGAGCTTAAAGATTTTGCAACTGAGATTCAGTCAGCTGGATTG
genomic: CTCCTCTACAGCGTACAgtaagcaacc ... tattgtgcagGTTTTTGCTGAGCTTAAAGATTTTGCAACTGAGATTCAGTCAGCTGGATTG
EST: gi|116471098|gb|EG513690.1|EG513690
EST:     ATACACCAGCTGTTGCGGTTGAACGTGGAACCACTCCTCTACAGCGTACA                         GTTTTTGCTGAGCTTAAAGATTTTGCAACTGAGATTCAGTCAGCTGGATTG
genomic: ATACACCAGCTGTTGCGGTTGAACGTGGAACCACTCCTCTACAGCGTACAgtaagcaacc ... tattgtgcagGTTTTTGCTGAGCTTAAAGATTTTGCAACTGAGATTCAGTCAGCTGGATTG
EST: gi|164142672|gb|ES020164.1|ES020164
EST:     ATACACCAGCTGTTGCGGTTGAACGTGGAACCACTCCTCTACAGCGTACA                         GTTTTTGCTGAGCTTAAAGATTTTGCAAC
genomic: ATACACCAGCTGTTGCGGTTGAACGTGGAACCACTCCTCTACAGCGTACAgtaagcaacc ... tattgtgcagGTTTTTGCTGAGCTTAAAGATTTTGCAAC
EST: gi|125079085|gb|EL141224.1|EL141224
EST:     GTGGAACCACTCCTCTACAGCGTACA                         GTTTTTGCTGAGCTTAAAGATTTTGCAACTGAGATTCAGTCAGCTGGATTG
genomic: GTGGAACCACTCCTCTACAGCGTACAgtaagcaacc ... tattgtgcagGTTTTTGCTGAGCTTAAAGATTTTGCAACTGAGATTCAGTCAGCTGGATTG
EST: gi|86080219|gb|DR375976.1|DR375976
EST:     ATACACCAGCTGTTGCGGTTGAACGTGGAACCACTCCTCTACAGCGTACA                         GTTTTTGCTGAGCTTAAAGATTTTGCAACTGAGATTCAGTCAGCTGGATTG
genomic: ATACACCAGCTGTTGCGGTTGAACGTGGAACCACTCCTCTACAGCGTACAgtaagcaacc ... tattgtgcagGTTTTTGCTGAGCTTAAAGATTTTGCAACTGAGATTCAGTCAGCTGGATTG
EST: gi|86085644|gb|DR381403.1|DR381403
EST:     ATACACCAGCTGTTGCGGTTGAACGTGGAACCACTCCTCTACAGCGTACA                         GTTTTTGCTGAGCTTAAAGATTTTGCAACTGAGATTCAGTCAGCTGGATTG
genomic: ATACACCAGCTGTTGCGGTTGAACGTGGAACCACTCCTCTACAGCGTACAgtaagcaacc ... tattgtgcagGTTTTTGCTGAGCTTAAAGATTTTGCAACTGAGATTCAGTCAGCTGGATTG
EST: gi|124995142|gb|EL067411.1|EL067411
EST:     TTGCGGTTGAACGTGGAACCACTCCTCTACAGCGTACA                         GTTTTTGCTGAGACTTAAAGATTTTGCAACTGAGATTCAGTCAGCTGGATT
genomic: TTGCGGTTGAACGTGGAACCACTCCTCTACAGCGTACAgtaagcaacc ... tattgtgcagGTTTTTGCTGAG-CTTAAAGATTTTGCAACTGAGATTCAGTCAGCTGGATT
EST: gi|124824307|gb|EH909173.1|EH909173
EST:     ATACACCAGCTGTTGCGGTTGAACGTGGAACCACTCCTCTACAGCGTACA                         GTTTTTGCTGAGCTTAAAGATTTTGCAACTGAGATTCAGTCAG
genomic: ATACACCAGCTGTTGCGGTTGAACGTGGAACCACTCCTCTACAGCGTACAgtaagcaacc ... tattgtgcagGTTTTTGCTGAGCTTAAAGATTTTGCAACTGAGATTCAGTCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctcaagagggggtatgttaacttgagtttttaaggcttttgggatattgtgcagGTTTTTGCTGAGCTTAAAGATTTTGCAACTGAGATTCAGTCAGCTGGATTGGTGTCACCAACACTCATCATCATAGGGAAAGTCGTTGAGCTCTCACCTT
               tgttaac  putative branch site (score: 2)
                         agtttttaa  TA-rich tract