1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagaaaatttattgaaattcacgtttattatttacttatgtatatttacatttttaaggtgttagttgttcaaaaaatctgatgatgagtttttttgtcatcttaattatggttttgtagCTGCAACTATGTTTGTTGGTATGACGTTTCCGTTCTTCGGTGGGCTTTTGGCGTTCTTTGGTGGATTCGCGTTTGCCCCAACCACATACTTC
species | Arabidopsis thaliana |
transcript | AT5G40780.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CCGTAATTTCTACGTTG CTGCAACTATGTTTGTTGGTATGACGTTTCC-TTCTTCGGTGGGCTTTTGGEST: gi|164184953|gb|ES091111.1|ES091111
genomic: CCGTAATTTCTACGTTGgtaagaaaat ... ggttttgtagCTGCAACTATGTTTGTTGGTATGACGTTTCCGTTCTTCGGTGGGCTTTTGG
EST: TTTCAGACCAACCACAACTCTTCGGTTCTTTGTGCGTAATTTCTACGTTG CTGCAACTATGTTTGTTGGTATGACGTTTCCGTTCTTCGGTGGGCTTEST: gi|86086870|gb|DR382629.1|DR382629
genomic: TTTCAGACCAACCACAACTCTTCGGTTCTTTGTCCGTAATTTCTACGTTGgtaagaaaat ... ggttttgtagCTGCAACTATGTTTGTTGGTATGACGTTTCCGTTCTTCGGTGGGCTT
EST: TTTCAGACCAACCMCAACTCTTCGGTTYTTTGTCCGTAATTTYTACGTTG CTGCAACTATGTTTGTTGGTAWGACGTTTCCGTTYTTCGGTGGGCTTTTGGEST: gi|164172856|gb|ES037679.1|ES037679
genomic: TTTCAGACCAACCACAACTCTTCGGTTCTTTGTCCGTAATTTCTACGTTGgtaagaaaat ... ggttttgtagCTGCAACTATGTTTGTTGGTATGACGTTTCCGTTCTTCGGTGGGCTTTTGG
EST: TTTCAGACCAACCACAACTCTTCGGTTCTTTGTGCGTAATTTCTACGTTG CTGCAACTATGTTTGTTGGTATGACGTTTCCGTTCTTCGGTGGGCTTEST: gi|124889119|gb|EH968021.1|EH968021
genomic: TTTCAGACCAACCACAACTCTTCGGTTCTTTGTCCGTAATTTCTACGTTGgtaagaaaat ... ggttttgtagCTGCAACTATGTTTGTTGGTATGACGTTTCCGTTCTTCGGTGGGCTT
EST: TTTCAGACCAACCACGACTCTTCGGTTCTTTGTCCGTAATTTCTACGTTG CTGCAACTATGTTTGTTGGTATGACGTTTCCGTTCTTCGGTGGGCTTTTGG
genomic: TTTCAGACCAACCACAACTCTTCGGTTCTTTGTCCGTAATTTCTACGTTGgtaagaaaat ... ggttttgtagCTGCAACTATGTTTGTTGGTATGACGTTTCCGTTCTTCGGTGGGCTTTTGG
ttgttcaaaaaatctgatgatgagtttttttgtcatcttaattatggttttgtagCTGCAACTATGTTTGTTGGTATGACGTTTCCGTTCTTCGGTGGGCTTTTGGCGTTCTTTGGTGGATTCGCGTTTGCCCCAACCACATACTTC
tcttaat putative branch site (score: 3)
tttttttgtcatctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaaaatttattgaaattcacgtttattatttacttatgtatatttacatttttaaggtgttagttgttcaaaaaatctgatgatgagtttttttgtcatcttaattatggttttgtagCTGCAACTATGTTTGTTGGTATGACGTTTCCGTTCTTCGGTGGGCTTTTGGCGTTCTTTGGTGGATTCGCGTTTGCCCCAACCACATACTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA