1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaaagccacaacaccataaaggaacaaaatgagtatatcatgcatgtcaaattttgtgctcttggatcttaataacatctcttgctaaatatgatttctacagGGTTATTTACCAGTAGAGGCTTTGGTTCTAGATATTGAAGCATGGGGGTTAGGTGGAAACAAGGCTAGGGAAATTCAACAAAAATACCAGAAAAGAGAAG
species | Arabidopsis thaliana |
transcript | AT5G39590.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATCATGCAGTTGATAAAACTTACCAGTCAGGCTCTCTTTTCCCAAACCAG GGTTATTTACCAGTAGAGGCTTTGGTTCTAGATATTGAAGCATGGGGGTTAEST: gi|124807891|gb|EH894295.1|EH894295
genomic: ATCATGCAGTTGATAAAACTTACCAGTCAGGCTCTCTTTTCCCAAACCAGgtaaagccac ... atttctacagGGTTATTTACCAGTAGAGGCTTTGGTTCTAGATATTGAAGCATGGGGGTTA
EST: GCAGTTGATAAAACTTACCAGTCAGGCTCTCTTTTCCCAAACCAG GGTTATTTACCAGTAGAGGCTTTGGTTCTAGATATTGAAGCATGGGGGTTAEST: gi|116398583|gb|EG441175.1|EG441175
genomic: GCAGTTGATAAAACTTACCAGTCAGGCTCTCTTTTCCCAAACCAGgtaaagccac ... atttctacagGGTTATTTACCAGTAGAGGCTTTGGTTCTAGATATTGAAGCATGGGGGTTA
EST: ATCATGCAGTTGATAAAACTTACCAGTCAGGCTCTCTTTTCCCAAACCAG GGTTATTTACCAGTAGAGGCTTTGGTTTTAGATATTGAAGCATGGGGGTTAEST: gi|86079666|gb|DR375423.1|DR375423
genomic: ATCATGCAGTTGATAAAACTTACCAGTCAGGCTCTCTTTTCCCAAACCAGgtaaagccac ... atttctacagGGTTATTTACCAGTAGAGGCTTTGGTTCTAGATATTGAAGCATGGGGGTTA
EST: ATCATGCAGTTGATAAAACTTACCAGTCAGGCTCTCTTTTCCCAAACCAG GGTTATTTACCAGTAGAGGCTTTGGTTCTAGATATTGAAGCATGGGGGTTAEST: gi|116398582|gb|EG441174.1|EG441174
genomic: ATCATGCAGTTGATAAAACTTACCAGTCAGGCTCTCTTTTCCCAAACCAGgtaaagccac ... atttctacagGGTTATTTACCAGTAGAGGCTTTGGTTCTAGATATTGAAGCATGGGGGTTA
EST: ATCATGCAGTTGATAAAACTTACCAGTCAGGCTCTCTTTTCCCAAACCAG GGTTATTTACCAGTAGAGGCTTTGGTTCTAGATATTGAAGCATGGGGGTTA
genomic: ATCATGCAGTTGATAAAACTTACCAGTCAGGCTCTCTTTTCCCAAACCAGgtaaagccac ... atttctacagGGTTATTTACCAGTAGAGGCTTTGGTTCTAGATATTGAAGCATGGGGGTTA
aaattttgtgctcttggatcttaataacatctcttgctaaatatgatttctacagGGTTATTTACCAGTAGAGGCTTTGGTTCTAGATATTGAAGCATGGGGGTTAGGTGGAAACAAGGCTAGGGAAATTCAACAAAAATACCAGAAAAGAGAAG
tttctac CT-rich tract
taaatatgatttcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaagccacaacaccataaaggaacaaaatgagtatatcatgcatgtcaaattttgtgctcttggatcttaataacatctcttgctaaatatgatttctacagGGTTATTTACCAGTAGAGGCTTTGGTTCTAGATATTGAAGCATGGGGGTTAGGTGGAAACAAGGCTAGGGAAATTCAACAAAAATACCAGAAAAGAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA