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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcatttgcaatttttttcaaatgctttgcatattgcaaatattaatcaaagttacacccttctgcagAAATATTGATAAGCGCGTATGTGTTGCTGGTTGTGATCCCAAATACGTCGAATCACCCACTGAGCCGAAGTGGTCATCAAGAG

Basic information

species Arabidopsis thaliana
transcript AT5G36210.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164051920|gb|ES201976.1|ES201976
EST:     ATGCCATGGGATAAAGCAGAGCTGTGGGTTGGGTACATTTCCGAGGGCGG                         AAATATTGATAAGCGCGTATGTGTTGCTGGTTGTGATCCCAAATACGTC
genomic: ATGCCATGGGATAAAGCAGAGCTGTGGGTTGGGTACATTTCCGAGGGCGGgtaagcattt ... ccttctgcagAAATATTGATAAGCGCGTATGTGTTGCTGGTTGTGATCCCAAATACGTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttcaaatgctttgcatattgcaaatattaatcaaagttacacccttctgcagAAATATTGATAAGCGCGTATGTGTTGCTGGTTGTGATCCCAAATACGTCGAATCACCCACTGAGCCGAAGTGGTCATCAAGAG
                           tattaat  putative branch site (score: 2)
 cacccttct  putative PPT
 atattgcaaatattaa  TA-rich tract