1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaaggagttaaaatactttaacataatactactgcactttttctaagctttaaagtattggtcactctctagaagaacctaaactctcgacaaacagcttacgaatgtatgaactttatttatttcttgcacagGAGAACCTCAAGAGAAGAAGATGACATCTATTGAAGATATCAAATCTCTTGACATGAAAAC
species | Arabidopsis thaliana |
transcript | AT5G29000.3 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAATATAGAACGGCAAGGTATAAACCGGAGACTTCGGAAGTTACAG GAGAACCTCAAGAGAAGAAGATGACATCTATTGAAGATATCAAATCTCTTGEST: gi|86085768|gb|DR381527.1|DR381527
genomic: AAATATAGAACGGCAAGGTATAAACCGGAGACTTCGGAAGTTACAGgtaaggagtt ... tcttgcacagGAGAACCTCAAGAGAAGAAGATGACATCTATTGAAGATATCAAATCTCTTG
EST: AAATATAGAACGGCAAGGTATAAACCGGAGACTTCGGAAGTTACAG GAGAACCTCAAGAGAAGAAGATGACATCTATTGAAGATATCAAATCTCTTG
genomic: AAATATAGAACGGCAAGGTATAAACCGGAGACTTCGGAAGTTACAGgtaaggagtt ... tcttgcacagGAGAACCTCAAGAGAAGAAGATGACATCTATTGAAGATATCAAATCTCTTG
taaactctcgacaaacagcttacgaatgtatgaactttatttatttcttgcacagGAGAACCTCAAGAGAAGAAGATGACATCTATTGAAGATATCAAATCTCTTGACATGAAAAC
agcttac putative branch site (score: 3)
ctttatttatttctt putative PPT
aatgtatgaactttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggagttaaaatactttaacataatactactgcactttttctaagctttaaagtattggtcactctctagaagaacctaaactctcgacaaacagcttacgaatgtatgaactttatttatttcttgcacagGAGAACCTCAAGAGAAGAAGATGACATCTATTGAAGATATCAAATCTCTTGACATGAAAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA