1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagtgtgatgcaaatcataacttcactacttttgctgggtctgttgttgttgttgttgttgttgtctcactgcgtattttgttgtcaattgtagATGGATCGTATACTGACGGCGTATAGGAAGTCCTCAAAGCAATGGTCAGCCACGTTTAACAAGCTCGCACAAG
species | Arabidopsis thaliana |
transcript | AT5G26110.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATGTACTTGAAAGACCCTTACTCTCAATGCATTCGTCATGCGGGAATGTG ATGGATCGTATACTGACGGCGTATAGGAAGTCCTCAAAGCAATGGTCAGCCEST: gi|116425432|gb|EG468024.1|EG468024
genomic: ATGTACTTGAAAGAGCCTTACTCTCAATGCATTCGTCATGCGGGAATGTGgtaagtgtga ... tcaattgtagATGGATCGTATACTGACGGCGTATAGGAAGTCCTCAAAGCAATGGTCAGCC
EST: ATGTACTTGAAAGAGCCTTACTCTCAATGCATTCGTCATGCGGGAATGTG ATGGATCGTATACTGACGGCGTATAGGAAGTCCTCAAAGCAATGGTCAGCCEST: gi|164048510|gb|ES144204.1|ES144204
genomic: ATGTACTTGAAAGAGCCTTACTCTCAATGCATTCGTCATGCGGGAATGTGgtaagtgtga ... tcaattgtagATGGATCGTATACTGACGGCGTATAGGAAGTCCTCAAAGCAATGGTCAGCC
EST: GCGGGAATGTG ATGGATCGTATACTGACGGCGTATAGGAAGTCCTCAAAGCAATGGTCAGCCEST: gi|86077697|gb|DR373454.1|DR373454
genomic: GCGGGAATGTGgtaagtgtga ... tcaattgtagATGGATCGTATACTGACGGCGTATAGGAAGTCCTCAAAGCAATGGTCAGCC
EST: ATGTACTTGAAAGAGCCTTACTCTCAATGCATTCGTCATGCGGGAATGTG ATGGATCGTATACTGACGGCGTATAGGAAGTCCTCAAAGCAATGGTCAGCC
genomic: ATGTACTTGAAAGAGCCTTACTCTCAATGCATTCGTCATGCGGGAATGTGgtaagtgtga ... tcaattgtagATGGATCGTATACTGACGGCGTATAGGAAGTCCTCAAAGCAATGGTCAGCC
tctgttgttgttgttgttgttgttgtctcactgcgtattttgttgtcaattgtagATGGATCGTATACTGACGGCGTATAGGAAGTCCTCAAAGCAATGGTCAGCCACGTTTAACAAGCTCGCACAAG
gtctcac putative branch site (score: 3)
tattttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgtgatgcaaatcataacttcactacttttgctgggtctgttgttgttgttgttgttgttgtctcactgcgtattttgttgtcaattgtagATGGATCGTATACTGACGGCGTATAGGAAGTCCTCAAAGCAATGGTCAGCCACGTTTAACAAGCTCGCACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT