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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttattgatgtcatgctgcttaataagaaagattacaaaatacgtaaatatttgaaattgcattaaggaaatgattatatatatataaaatatgcgcagAGACGATTTCAAAGATTACGCGGATCTATGTTTCGAGAGATTTGGTGATAGAGTAAAGCACTGGATCACCATCAACCAGCTTTTCACAGTGCCTACGAGA

Basic information

species Arabidopsis thaliana
transcript AT5G25980.3
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116450039|gb|EG492631.1|EG492631
EST:     CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCAT                         AGACGATTTCAAAGATTACGCGGATCTATGTTTCGAGAGATTTGGTGATAG
genomic: CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCATgtatgttatt ... atatgcgcagAGACGATTTCAAAGATTACGCGGATCTATGTTTCGAGAGATTTGGTGATAG
EST: gi|47831614|gb|CK121298.1|CK121298
EST:     CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCAT                         AGACGATTTCAAAGATTACGCGGATCTATGNTTCGAGAGATTTGGTGATAG
genomic: CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCATgtatgttatt ... atatgcgcagAGACGATTTCAAAGATTACGCGGATCTATGTTTCGAGAGATTTGGTGATAG
EST: gi|47828775|gb|CK118459.1|CK118459
EST:     CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCAT                         AGACGATTTCAAAGATTACGCGGATCTATGTTTCGAGAG
genomic: CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCATgtatgttatt ... atatgcgcagAGACGATTTCAAAGATTACGCGGATCTATGTTTCGAGAG
EST: gi|124941624|gb|EL017961.1|EL017961
EST:     CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCAT                         AGACGATTTCAAAGATTACGCGGA
genomic: CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCATgtatgttatt ... atatgcgcagAGACGATTTCAAAGATTACGCGGA
EST: gi|116410417|gb|EG453009.1|EG453009
EST:     CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCAT                         AGACGATTTCAAAGATTACGCGGATCTATGTTTCGAGAGATTTGGTGATAG
genomic: CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCATgtatgttatt ... atatgcgcagAGACGATTTCAAAGATTACGCGGATCTATGTTTCGAGAGATTTGGTGATAG
EST: gi|116477703|gb|EG520295.1|EG520295
EST:     CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCAT                         AGACGATTTCAAAGATTACGCGGATCTATGTTTCGAGAGATTTGGTGATAG
genomic: CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCATgtatgttatt ... atatgcgcagAGACGATTTCAAAGATTACGCGGATCTATGTTTCGAGAGATTTGGTGATAG
EST: gi|125277407|gb|EL291492.1|EL291492
EST:     CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCAT                         AGACGATTTCAAAGATTACGCGGAT
genomic: CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCATgtatgttatt ... atatgcgcagAGACGATTTCAAAGATTACGCGGAT
EST: gi|125257121|gb|EL271206.1|EL271206
EST:     CTTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCAT                         AGACGATTTCAAAGATTACGCGG
genomic: C-TCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCATgtatgttatt ... atatgcgcagAGACGATTTCAAAGATTACGCGG
EST: gi|116400371|gb|EG442963.1|EG442963
EST:     CTCAAATCATTGCA-GATGAATATGAAGGTTTCTTGGACAGAACGATCAT                         AGACGATTTCAAAGATTACGCGGATCTATGTTTCGAGAGATTTGGTGATAG
genomic: CTCAA-TCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCATgtatgttatt ... atatgcgcagAGACGATTTCAAAGATTACGCGGATCTATGTTTCGAGAGATTTGGTGATAG
EST: gi|116410415|gb|EG453007.1|EG453007
EST:     CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCAT                         AGACGATTTCAAAGATTACGCGGATCTATGTTTCGAGAGATTTGGTGATAG
genomic: CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCATgtatgttatt ... atatgcgcagAGACGATTTCAAAGATTACGCGGATCTATGTTTCGAGAGATTTGGTGATAG
EST: gi|47829862|gb|CK119546.1|CK119546
EST:     CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCAT                         AGACGATTTCAAAGATTACGCGGATCTATGTTTCGAGAGATTTGGTGATAG
genomic: CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCATgtatgttatt ... atatgcgcagAGACGATTTCAAAGATTACGCGGATCTATGTTTCGAGAGATTTGGTGATAG
EST: gi|116439048|gb|EG481640.1|EG481640
EST:     CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCAT                         AGACGATTTCAAAGATTACGCGGATCTATGTTTCGAGAGATTTGGTGATAG
genomic: CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCATgtatgttatt ... atatgcgcagAGACGATTTCAAAGATTACGCGGATCTATGTTTCGAGAGATTTGGTGATAG
EST: gi|47828808|gb|CK118492.1|CK118492
EST:     CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCAT                         AGACGATTTCAAAGATTACGCGGATCTATGTTTCGAGAGATTTGGTGATAG
genomic: CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCATgtatgttatt ... atatgcgcagAGACGATTTCAAAGATTACGCGGATCTATGTTTCGAGAGATTTGGTGATAG
EST: gi|116439115|gb|EG481707.1|EG481707
EST:     CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCAT                         AGACGATTTCAAAGATTACGCGGATCTATGTTTCGAGAGATTTGGTGATAG
genomic: CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCATgtatgttatt ... atatgcgcagAGACGATTTCAAAGATTACGCGGATCTATGTTTCGAGAGATTTGGTGATAG
EST: gi|125131250|gb|EL173985.1|EL173985
EST:     CTCAATCATTGCTAAGATGAATATGAAGGTTTCTTGGACAGAACGATCAT                         AGACGATTTCAAAGATTACGCGGATCTATGTTTCGAG
genomic: CTCAATCATTGC-AAGATGAATATGAAGGTTTCTTGGACAGAACGATCATgtatgttatt ... atatgcgcagAGACGATTTCAAAGATTACGCGGATCTATGTTTCGAG
EST: gi|116477702|gb|EG520294.1|EG520294
EST:     CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCAT                         AGACGATTTCAAAGATTACGCGGATCTATGTTTCGAGAGATTTGGTGATAG
genomic: CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCATgtatgttatt ... atatgcgcagAGACGATTTCAAAGATTACGCGGATCTATGTTTCGAGAGATTTGGTGATAG
EST: gi|124887972|gb|EH966874.1|EH966874
EST:     TGAAGGTTTCTTGGACAGAACGATCAT                         AGACGATTTCAAAGATTACGCGGATCTATGTTTCGAGAGATTTGGTGATAG
genomic: TGAAGGTTTCTTGGACAGAACGATCATgtatgttatt ... atatgcgcagAGACGATTTCAAAGATTACGCGGATCTATGTTTCGAGAGATTTGGTGATAG
EST: gi|116444211|gb|EG486803.1|EG486803
EST:     CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGGCAGAACGATCAT                         AGACGATTTCAAAGATTACGCGGATCTATGTTTCGAGAGATTTGGTGATAG
genomic: CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCATgtatgttatt ... atatgcgcagAGACGATTTCAAAGATTACGCGGATCTATGTTTCGAGAGATTTGGTGATAG
EST: gi|116410414|gb|EG453006.1|EG453006
EST:     CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCAT                         AGACGATTTCAAAGATTACGCGGATCTATGTTTCGAGAGATTTGGTGATAG
genomic: CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCATgtatgttatt ... atatgcgcagAGACGATTTCAAAGATTACGCGGATCTATGTTTCGAGAGATTTGGTGATAG
EST: gi|124863179|gb|EH947616.1|EH947616
EST:     GTTTCTTGGACAGAACGATCAT                         AGACGATTTCAAAGATTACGCGGATCTATGTTTCGAGAGATTTGGTGATAG
genomic: GTTTCTTGGACAGAACGATCATgtatgttatt ... atatgcgcagAGACGATTTCAAAGATTACGCGGATCTATGTTTCGAGAGATTTGGTGATAG
EST: gi|47829256|gb|CK118940.1|CK118940
EST:     CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCAT                         AGACGATTTCAAAGATTACGCGGATCTATGTTTCGAGAGATTTGGTGATAG
genomic: CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCATgtatgttatt ... atatgcgcagAGACGATTTCAAAGATTACGCGGATCTATGTTTCGAGAGATTTGGTGATAG
EST: gi|116410418|gb|EG453010.1|EG453010
EST:     CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCAT                         AGACGATTTCAAAGATTACGCGGATCTATGTTTCGAGAGATTTGGTGATAG
genomic: CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCATgtatgttatt ... atatgcgcagAGACGATTTCAAAGATTACGCGGATCTATGTTTCGAGAGATTTGGTGATAG
EST: gi|124878512|gb|EH957949.1|EH957949
EST:     CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCAT                         AGACGATTTCAAAGATTACGCGGA
genomic: CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCATgtatgttatt ... atatgcgcagAGACGATTTCAAAGATTACGCGGA
EST: gi|125274643|gb|EL288728.1|EL288728
EST:     CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCAT                         AGACGATTTCAAAGATTACGCGGATCTATGTT
genomic: CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCATgtatgttatt ... atatgcgcagAGACGATTTCAAAGATTACGCGGATCTATGTT
EST: gi|124988541|gb|EL060920.1|EL060920
EST:     CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCAT                         AGACGATTTCAAAGATTACGCGGA
genomic: CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCATgtatgttatt ... atatgcgcagAGACGATTTCAAAGATTACGCGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaatatttgaaattgcattaaggaaatgattatatatatataaaatatgcgcagAGACGATTTCAAAGATTACGCGGATCTATGTTTCGAGAGATTTGGTGATAGAGTAAAGCACTGGATCACCATCAACCAGCTTTTCACAGTGCCTACGAGA
          aaattgcattaaggaa  TA-rich tract