1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgcaatttttgttaacagattggactcttgggatctcctctattttgcagaactaaatattttatacttgatttgtagTGTCAAGCATGAATACGAGGGACAATGGAGTGAGAAGACCCGTTTGACTACCTGTGATCCCCACACTAAGCGACTGGTTGTTAGCTCAGCTACCCCTCAA
species | Arabidopsis thaliana |
transcript | AT5G25100.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCTGCAAGGATTGTGGGAGTTTGAGGTCAAACCATACAG TGTCAAGCATGAATACGAGGGACAATGGAGTGAGAAGACCCGTTTGACTACEST: gi|164057489|gb|EL971006.1|EL971006
genomic: GCTGCAAGGATTGTGGGA-TTTGAGGTCAAACCATACAGgtgcaatttt ... tgatttgtagTGTCAAGCATGAATACGAGGGACAATGGAGTGAGAAGACCCGTTTGACTAC
EST: CAAGGATTGTGGGATTTGAGGTCAAACCATACAG TGTCAAGCATGAATACGAGGGACAAEST: gi|86072801|gb|DR368558.1|DR368558
genomic: CAAGGATTGTGGGATTTGAGGTCAAACCATACAGgtgcaatttt ... tgatttgtagTGTCAAGCATGAATACGAGGGACAA
EST: ATGCAAACCGATGCTGCAAGGATTGTGGGATTTGAGGTCAAACCATACAG TGTCAAGCATGAATACGAGGGACAATGGAGTGAGAAGACCCGTTTGACTACEST: gi|164199457|gb|EL973959.1|EL973959
genomic: ATGCAAACCGATGCTGCAAGGATTGTGGGATTTGAGGTCAAACCATACAGgtgcaatttt ... tgatttgtagTGTCAAGCATGAATACGAGGGACAATGGAGTGAGAAGACCCGTTTGACTAC
EST: ATGCAAACCGATGCTGCAAGGATTGTGGGATTTGAGGTCAAACCATACAG TGTCAAGCATGAATACGAGGGACAAEST: gi|163981181|gb|ES205257.1|ES205257
genomic: ATGCAAACCGATGCTGCAAGGATTGTGGGATTTGAGGTCAAACCATACAGgtgcaatttt ... tgatttgtagTGTCAAGCATGAATACGAGGGACAA
EST: TGCTGCAAGGATTGTGGGATTTGAGGTCAAACCATACAG TGTCAAGCATGAATACGAGGGACAATGGAGTGAGAAGACCCGTTTGACTAC
genomic: TGCTGCAAGGATTGTGGGATTTGAGGTCAAACCATACAGgtgcaatttt ... tgatttgtagTGTCAAGCATGAATACGAGGGACAATGGAGTGAGAAGACCCGTTTGACTAC
actcttgggatctcctctattttgcagaactaaatattttatacttgatttgtagTGTCAAGCATGAATACGAGGGACAATGGAGTGAGAAGACCCGTTTGACTACCTGTGATCCCCACACTAAGCGACTGGTTGTTAGCTCAGCTACCCCTCAA
aactaaatattttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcaatttttgttaacagattggactcttgggatctcctctattttgcagaactaaatattttatacttgatttgtagTGTCAAGCATGAATACGAGGGACAATGGAGTGAGAAGACCCGTTTGACTACCTGTGATCCCCACACTAAGCGACTGGTTGTTAGCTCAGCTACCCCTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT