Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcattggtttaccctttatgatgaaggcgtatgttgtctcttttctaaaacccatgcttaagttgatattttttcctgtgatgtcttgtatacagGGAGGGTTGATAATAAGTGATTCTTTGAACCATAGTTCTATTGTCAATGGTGCTCGAGGTTCTGGAGCCACTATCCGTGTTTTCCAGCATAACA

Basic information

species Arabidopsis thaliana
transcript AT5G23670.2
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G23670.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: Vv14s0068g01300.t01 (Vitis vinifera), 3'ss of exon 5
--gtatgcattggttta-------ccctttatgatgaaggcgtatgttgtctc----ttttctaaaacccatgcttaa--gttgatattttttcctgtgatgtcttgtatacagGGAGGGTTGATAATAAGTGATTCTTTGAACCATAGTTCTATTGTCAATGGTGCTCGAGGTTCTGGAGCCACTATCCGTGTTTTCCAGCATAACA
   | | || |    ||       | ||| || |  | ||   | || |  |      ||| |   ||  || ||| |  ||  || ||||  | ||| || ||| || |||||||||| || || || |||||||| ||||| ||||| || ||||| |||||||||||||| |||||||| ||||| ||||||||||| ||||| |
gtttgtacagttaactaataagagcacttcataacaagggttcacgtggcttagaagctttgtgtcactaatccttgaatgtgaatgttttggcttgttatttct-gtttacagGGAGGCTTAATTATTAGTGATTCCTTGAATCATAGCTCCATTGTGAATGGTGCTCGAGGATCTGGAGCTACTATTCGTGTTTTCCAACATAATA

upper sequence: AT5G23670.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: Vv17s0000g00500.t01 (Vitis vinifera), 3'ss of exon 5
----------gtatgcattggtttaccctttatgatg-aaggcgtatgt--tgtctcttttctaaaacccatgcttaagttgatattttttcctgtgatgtcttg-tatacagGGAGGGTTGATAATAAGTGATTCTTTGAACCATAGTTCTATTGTCAATGGTGCTCGAGGTTCTGGAGCCACTATCCGTGTTTTCCAGCATAACA
           | |  |||| | |   || |||  |  ||||| |||||  ||  |      | ||  |  |  | ||  ||| ||| || | |    |||  || |  |||||| ||||||||||| ||||||||||||||||| |  || |||||||||||||||||||| || ||||| ||  | || |||||||| || || |
gtattcagttatttaaattgatattgtctatattgtacaaggcttatgtaatgcatgggcattgaattctttattcaatgtgaaattctt-ctttcattgtgatgattcacagGGGGGGTTGATAATTAGTGATTCTTTGAACCACAACTCCATTGTCAATGGTGCTCGAGGATCAGGAGCTACCGTTCGAGTTTTCCAACACAATA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttctaaaacccatgcttaagttgatattttttcctgtgatgtcttgtatacagGGAGGGTTGATAATAAGTGATTCTTTGAACCATAGTTCTATTGTCAATGGTGCTCGAGGTTCTGGAGCCACTATCCGTGTTTTCCAGCATAACA
                 ttaagttgatattttt  TA-rich tract