Sequence
atgc intronic sequence ATGC exonic sequence...caagagattggttcccttaaatatgtagcattctttgagaacctaatagtatttattgtcagacttctatctaacagtaatcctctttttattttcacagATCCAGAGATGCAGAGCAATATAGACAAGACTCTTCATACTGGTCATGCTTCATACAAAGTTTCTCTTGCG
Basic information
| species | Arabidopsis thaliana |
| transcript | AT5G23510.1 |
| intron # | 5 |
| splice site | 3' |
| intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT5G23510.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: Vv07s0130g00420.t01 (Vitis vinifera), 3'ss of exon 16
-caagagattggttcccttaaatatgtagcattctttgagaacctaatagtatttattgtcagacttctatctaacagtaatcctctttttattttcacagATCCAGAGATGCAGAGCAATATAGACAAGACTCTTCATACTGGTCATGCTTCATACAAAGTTTCTCTTGCG
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tcaatttatttctcttattaaattttcatgttttcttgggcacattgct-tttgcatttttaatgttctgatactgtctatttccccctcactgggcacagATTCTGAAATGCAGAGCCACATAGAGAAGACCCTTGTTACTGGTCATACTTCATACAAAGTATCCCTGTCGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124968114|gb|EL042090.1|EL042090EST: GGAGAGCTTGTGAAGGTTTTTGCCAATGATAATCGCAAGATCGCTTGCC ATCCAGAGATGCAGAGCAATATAGACAAGACTCTTC
genomic: GGAGAGCTTGTGAAGGTTTTTGCCAATGATAATCGCAAGATCGCTTGCCgtaagttaat ... attttcacagATCCAGAGATGCAGAGCAATATAGACAAGACTCTTC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atagtatttattgtcagacttctatctaacagtaatcctctttttattttcacagATCCAGAGATGCAGAGCAATATAGACAAGACTCTTCATACTGGTCATGCTTCATACAAAGTTTCTCTTGCG
atctaac putative branch site (score: 2)
tcctctttttattttc putative PPT
tctttttattttca TA-rich tract
