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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cagcgcactgtattgttatcttgaaaagcaatttaccgggaacctttttttttatctttctgtgtgttaatggatctgatatgcagcttgtctttaccagGTTTGGGATTTAACAGCTGGAAAACTGCTGACCGAGTTTAAGAGTCATGAAGGGCAAATTCAAAGCCTAGATTTTCATCCTCATGAATTCCTACTGGCAA

Basic information

species Arabidopsis thaliana
transcript AT5G23430.2
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G23430.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: Vv10s0071g01150.t01 (Vitis vinifera), 3'ss of exon 4
cagcgcactgtattgttatcttgaaaagcaatttaccgggaacctttttttttatctttctgtgtgttaatggatctgatatgcagcttgt--ctttaccagGTTTGGGATTTAACAGCTGGAAAACTGCTGACCGAGTTTAAGAGTCATGAAGGGCAAATTCAAAGCCTAGATTTTCATCCTCATGAATTCCTACTGGCAA
  |   | | |   | | ||      |    |||   |  |||||| |   |  | |||   | | |||||     ||  |   |  |     ||| | ||| | |||||| | || ||||||||  || ||  ||| || || |||||||| || ||  ||||  || |||||||||||||||||||||| || |||||||
-tgaaaaatatgcagct-tcccacttacatgtttgtggttaaccttgtaagtgtttttttgtttttttaatcatcttgccaataaaatgactacttcaacagCTGTGGGATCTGACTGCTGGAAAGTTGTTGCACGATTTCAAAAGTCATGAGGGCCAGCTTCAGTGCATAGATTTTCATCCTCATGAATTTCTGCTGGCAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttttttatctttctgtgtgttaatggatctgatatgcagcttgtctttaccagGTTTGGGATTTAACAGCTGGAAAACTGCTGACCGAGTTTAAGAGTCATGAAGGGCAAATTCAAAGCCTAGATTTTCATCCTCATGAATTCCTACTGGCAA
                                         cttgtcttt  CT-rich tract
     tttatcttt  TA-rich tract