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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtagtactaaaaaagctaaaacacattctatagttttcaagtaattggttcttacaacattgtattggtttgtgtagGTGGCTCTTGCTCTGCACTTGGATGGGCTG

Basic information

species Arabidopsis thaliana
transcript AT5G23300.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116483520|gb|EG526112.1|EG526112
EST:     TGAAGATTGCTCCTGATCTGTCCAGAGGAGAGCTTGAAGATATTGCAGCG                         GTGGCTCTTGCTCTGCACTTGGATGGGCTG
genomic: TGAAGATTGCTCCTGATCTGTCCAGAGGAGAGCTTGAAGATATTGCAGCGgtacgtagta ... gtttgtgtagGTGGCTCTTGCTCTGCACTTGGATGGGCTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acattctatagttttcaagtaattggttcttacaacattgtattggtttgtgtagGTGGCTCTTGCTCTGCACTTGGATGGGCTG
                          ttcttac  putative branch site (score: 2)
      tatagtttt  TA-rich tract