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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatgattgaacttgaacatgacaaatggttgaggcttataacttctgcaagattagattctgagagaaaaatttggttttcttcttttgcagGAAGAGGCAGTTGCAGAGGGTGTTGATGATGAGGAGGAATTGGAGGAAATTCGAGCTCGGCTCGCTAAAGTTAGATCCTAACTGTTTCTAGTGACTCTTT

Basic information

species Arabidopsis thaliana
transcript AT5G22950.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116479515|gb|EG522107.1|EG522107
EST:     GGAAGGAGAGGATAAAGGTACCTGCACAGAAGGCGAGCACTTCACGTGAG                         GAAGAGGCAGTTGCAGAGGGTGTTGATGATGAGGAGGAATTGGAGGAAATT
genomic: GGAAGGAGAGGATAAAGGTACCTGCACAGAAGGCGAGCACTTCACGTGAGgtaagatgat ... tcttttgcagGAAGAGGCAGTTGCAGAGGGTGTTGATGATGAGGAGGAATTGGAGGAAATT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataacttctgcaagattagattctgagagaaaaatttggttttcttcttttgcagGAAGAGGCAGTTGCAGAGGGTGTTGATGATGAGGAGGAATTGGAGGAAATTCGAGCTCGGCTCGCTAAAGTTAGATCCTAACTGTTTCTAGTGACTCTTT
 ttataac  putative branch site (score: 2)
                                  tttggttttcttcttt  putative PPT
                             aaaaatttggtttt  TA-rich tract