Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcatcagagctcacgttgctatatgcttttgatatcaccgaaccatctgtgaaatggagttactataactgtactccattgacttgatactctgcaatcttcgttcaatacttaaatgttatctgtcttatggaatttttcagATTACAAATGCTGTTTCGCAGTCTGTCAGACCCGTTGTTTCGAAAGGGAACCAATGTTACGTAATAACCACAAG

Basic information

species Arabidopsis thaliana
transcript AT5G22850.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164046448|gb|EL990625.1|EL990625
EST:     CAACATTGGCATACCTTTCTGAAGCAGCCTATGTTCCTTTCGTTGAAGCT                         ATTACAAATGCTGTTTCGC
genomic: CAACATTGGCATACCTTTCTGAAGCAGCCTATGTTCCTTTCGTTGAAGCTgtaagtcatc ... aatttttcagATTACAAATGCTGTTTCGC
EST: gi|164224456|gb|EL986234.1|EL986234
EST:     CAACATTGGCATACCTTTCTGAAGCAGCCTATGTTCCTTTCGTTGAAGCT                         ATTACAAATGCNGTTTCGCAG
genomic: CAACATTGGCATACCTTTCTGAAGCAGCCTATGTTCCTTTCGTTGAAGCTgtaagtcatc ... aatttttcagATTACAAATGCTGTTTCGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actctgcaatcttcgttcaatacttaaatgttatctgtcttatggaatttttcagATTACAAATGCTGTTTCGCAGTCTGTCAGACCCGTTGTTTCGAAAGGGAACCAATGTTACGTAATAACCACAAG
                                               tttttc  CT-rich tract
                  aatacttaaatgttat  TA-rich tract