1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaatttctctctcccacatgatctttgaatagatgtcttaaagttttcactattgtatttccaccatcccaattatcactttaagcatcttgattatgttgcagTCCTTGGTCTTATCACAATGGAGGTGCATGGCCAACTCTGCTATGGCAG
species | Arabidopsis thaliana |
transcript | AT5G22510.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATGGAAGGTGAAGAATGGCGAATTATAACCGGAAGTGATCCAAAGAATAC TCCTTGGTCTTATCACAATGGAGGTGCATGGCCAACTCTGCTATGGCAGEST: gi|124940282|gb|EL016747.1|EL016747
genomic: ATGGAAGGTGAAGAATGGCGAATTATAACCGGAAGTGATCCAAAGAATACgtaatttctc ... tatgttgcagTCCTTGGTCTTATCACAATGGAGGTGCATGGCCAACTCTGCTATGGCAG
EST: ATGGAAGGTGAAGAATGGCGAATTATAACCGGAAGTGATCCAAAGAATAC TCCTTGGTCTTATCACAATGGAGGTGCATGGCCAACTCTGC
genomic: ATGGAAGGTGAAGAATGGCGAATTATAACCGGAAGTGATCCAAAGAATACgtaatttctc ... tatgttgcagTCCTTGGTCTTATCACAATGGAGGTGCATGGCCAACTCTGC
ctattgtatttccaccatcccaattatcactttaagcatcttgattatgttgcagTCCTTGGTCTTATCACAATGGAGGTGCATGGCCAACTCTGCTATGGCAG
tcttgat putative branch site (score: 4)
aattatcactttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatttctctctcccacatgatctttgaatagatgtcttaaagttttcactattgtatttccaccatcccaattatcactttaagcatcttgattatgttgcagTCCTTGGTCTTATCACAATGGAGGTGCATGGCCAACTCTGCTATGGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG