1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaggtgaaacacagcttgtgtatagagtataacactattatatcacattttagtactcatttgaaaatgaaactagttgtaaacatgtggtggtattgttggctctatacagtaggtagtgaaaagcttttgcgcctgacatatgtttatttatagGTTGGTGCTGGTCTTCCTGTCATCGCATCCTTGAACCGCATAATTTCGTCTGGAGATCCTGTTCATAGGATTGTCGGTAGTTTGAGCG
species | Arabidopsis thaliana |
transcript | AT5G21060.3 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATTACGACAAATTGGCTTTGCATCCGCGATTCATCCGCCATGAATCTACT GTTGGTGCTGGTCTTCCTGTCATCGCATCCTTGAACCGCATAATTTCGTCTEST: gi|125287322|gb|EL301407.1|EL301407
genomic: ATTACGACAAATTGGCTTTGCATCCGCGATTCATCCGCCATGAATCTACTgtaggtgaaa ... ttatttatagGTTGGTGCTGGTCTTCCTGTCATCGCATCCTTGAACCGCATAATTTCGTCT
EST: TTACGACAAATTGGCTTTGCATCCGCGATTCATCCGCCATGAATCTACT GTTGGTGCTGGTCTTCCTGTCATCGCATCCTTGAACCGCATAAEST: gi|164044237|gb|ES211292.1|ES211292
genomic: TTACGACAAATTGGCTTTGCATCCGCGATTCATCCGCCATGAATCTACTgtaggtgaaa ... ttatttatagGTTGGTGCTGGTCTTCCTGTCATCGCATCCTTGAACCGCATAA
EST: CGACAAATTGGCTTTGCATCCGCGATTCTATCCGCCATGAATCTACT GTTGGTGCTGGTCTTCCTGTCATCGCATCCTTGAACCGCATAATTTCG
genomic: CGACAAATTGGCTTTGCATCCGCGATTC-ATCCGCCATGAATCTACTgtaggtgaaa ... ttatttatagGTTGGTGCTGGTCTTCCTGTCATCGCATCCTTGAACCGCATAATTTCG
gctctatacagtaggtagtgaaaagcttttgcgcctgacatatgtttatttatagGTTGGTGCTGGTCTTCCTGTCATCGCATCCTTGAACCGCATAATTTCGTCTGGAGATCCTGTTCATAGGATTGTCGGTAGTTTGAGCG
gcctgac putative branch site (score: 3)
tttattt putative PPT
acatatgtttatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggtgaaacacagcttgtgtatagagtataacactattatatcacattttagtactcatttgaaaatgaaactagttgtaaacatgtggtggtattgttggctctatacagtaggtagtgaaaagcttttgcgcctgacatatgtttatttatagGTTGGTGCTGGTCTTCCTGTCATCGCATCCTTGAACCGCATAATTTCGTCTGGAGATCCTGTTCATAGGATTGTCGGTAGTTTGAGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC