1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtatacatataatgaatcttcatgcatttataagttttaataatgatttggtttgaaactattagtatgtttatgtaaagatatggtttttggaaattgcagCAACAACAGGAGATGGCTATAGCAAGCAACGCAAGAGGAATGATGATGAGAGATCATGATGGGCAGTTTGGATATAGAGTGCAACCGATTCAGCCAAATC
species | Arabidopsis thaliana |
transcript | AT5G20240.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GAGAAGATGATGGCGGAGGAGCAACGGCAACTCACTTTCCAGCTG CAACAACAGGAGATGGCTATAGCAAGCAACGCAAGAGGAATGATGATGAGAEST: gi|86074442|gb|DR370199.1|DR370199
genomic: GAGAAGATGATGGCGGAGGAGCAACGGCAACTCACTTTCCAGCTGgtatacatat ... gaaattgcagCAACAACAGGAGATGGCTATAGCAAGCAACGCAAGAGGAATGATGATGAGA
EST: GAGAAGATGATGGCGGAGGAGCAACGGCAACTCACTTTCCAGCTG CAACAACAGGAGATGGCTATAGCAAGCAACGCAAGAGGAATGATGATGAGAEST: gi|19878054|gb|AU238885.1|AU238885
genomic: GAGAAGATGATGGCGGAGGAGCAACGGCAACTCACTTTCCAGCTGgtatacatat ... gaaattgcagCAACAACAGGAGATGGCTATAGCAAGCAACGCAAGAGGAATGATGATGAGA
EST: GAGAAGATGATGGCGGAGGAGCAACGGCAACTCACTTTCCAGCTG CAACAACAGGAGATGGCTATAGCAAGCAACGCAAGAGGAATGATGATGAGA
genomic: GAGAAGATGATGGCGGAGGAGCAACGGCAACTCACTTTCCAGCTGgtatacatat ... gaaattgcagCAACAACAGGAGATGGCTATAGCAAGCAACGCAAGAGGAATGATGATGAGA
ttggtttgaaactattagtatgtttatgtaaagatatggtttttggaaattgcagCAACAACAGGAGATGGCTATAGCAAGCAACGCAAGAGGAATGATGATGAGAGATCATGATGGGCAGTTTGGATATAGAGTGCAACCGATTCAGCCAAATC
tattagtatgtttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatacatataatgaatcttcatgcatttataagttttaataatgatttggtttgaaactattagtatgtttatgtaaagatatggtttttggaaattgcagCAACAACAGGAGATGGCTATAGCAAGCAACGCAAGAGGAATGATGATGAGAGATCATGATGGGCAGTTTGGATATAGAGTGCAACCGATTCAGCCAAATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA