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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagacaaaattacttgagctcatgtccttcatcaagaggtagttactctccgagactcatgccatgaacttcaatctgcagGATCATCGGCAGAGTGGCGCGGATATAAGCATTTCCTGCATACCAATAGATGACAG

Basic information

species Arabidopsis thaliana
transcript AT5G19220.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116473342|gb|EG515934.1|EG515934
EST:     TCCTTTCTGGAGATCACCTCTACAGGATGGATTACATGGATTTTATACAG                         GATCATCGGCAGAGTGGCGCGGATATAAGCATTTCCTGC
genomic: TCCTTTCTGGAGATCACCTCTACAGGATGGATTACATGGATTTTATACAGgtgagacaaa ... caatctgcagGATCATCGGCAGAGTGGCGCGGATATAAGCATTTCCTGC
EST: gi|125184339|gb|EL199293.1|EL199293
EST:     TCCTTTCTGGAGATCACCTCTACAGGATGGATTACATGGATTTTATACAG                         GATCATCGGCAGAGTGGCGTCGGATATAAGC
genomic: TCCTTTCTGGAGATCACCTCTACAGGATGGATTACATGGATTTTATACAGgtgagacaaa ... caatctgcagGATCATCGGCAGAGTGGCG-CGGATATAAGC