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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaaactttctcaactatgtattgtacttttcagcttattctccttgggaaatgattgaggctgttctggatattgaacatcattctcggaacattttctcacccaggaatatatttgaatggtcactttgatagGTTGATTTCTTATTCTACTCATCAAAGCAAGTTGGTTCTGTGCGGAAGCTTTTGACATCATTTTCTTCATGCGATAAACGTCAGACAGTTTTTGCAAGTG

Basic information

species Arabidopsis thaliana
transcript AT5G19210.2
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G19210.2 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: Vv05s0020g02870.t01 (Vitis vinifera), 3'ss of exon 5
gtaaaaactttctcaactatgtattgtacttttcagcttattctccttgggaaatgattgaggctgttctggatattgaacatcattctcggaacattttctcacccaggaatatatttgaatggtcacttt---gatagGTTGATTTCTTATTCTACTCATCAAAGCAAGTTGGTTCTGTGCGGAAGCTTTTGACATCATTTTCTTCATGCGATAAACGTCAGACAGTTTTTGCAAGTG
                                | ||||| ||    |  |||       |   ||    | | ||   ||   |  |   | |  ||||||||     |   |   |||  ||  | ||| |   ||||||| |||||| | ||| |  | ||||| |||||||||||| | || |||||||| |||||||  ||||||  | |||| |||||||| |||||||| ||||
-------------------------------gttagcttgttactgtatgga-------gtaacttcgttagcta--aaatgcctcttctgcagtattttctctgaaggagttgattttttattattactgtttggatagGTGGATTTCATGTTCAATGCTTCAAAACAAGTTGGTTCTCTTCGAAAGCTTTTAACATCATACTCTTCAACCAATAACCGTCAGACTGTTTTTGCCAGTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcattctcggaacattttctcacccaggaatatatttgaatggtcactttgatagGTTGATTTCTTATTCTACTCATCAAAGCAAGTTGGTTCTGTGCGGAAGCTTTTGACATCATTTTCTTCATGCGATAAACGTCAGACAGTTTTTGCAAGTG
                ttctcac  putative branch site (score: 2)
                                           tcacttt  putative PPT
                            aatatatttgaat  TA-rich tract