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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttactcaactttttcttatatcaccaaaagggaaaaatcacaattttttttgcgctctcatgtgatatagtcaatgtttgggatctgaaaacgtctttactgacttgaactgttttgggggttctctgtcacttgttggtctttgcttggctatacagGCTAGGCCGTTGTTCAAAGATCGTAGAAAGTTTCCGAAGATGGCGGATCCATCGCTGCAAGGGCGGTATCCAATGCGTGGTCTATATCAAGCACTTGCAG

Basic information

species Arabidopsis thaliana
transcript AT5G18610.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G18610.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: PP1S116_107V6.1 (Physcomitrella patens), 3'ss of exon 4
gtatgttactcaactttttcttatatcaccaaaagggaaaaatcacaattttttttgcgctctcatgtgatatagtcaatgtttgggatctgaaaacgtctt-tactgacttgaactgttttgggggttctctgtcacttgttggtctttgcttggctatacagGCTAGGCCGTTGTTCAAAGATCGTAGAAAGTTTCCGAAGATGGCGGATCCATCGCTGCAAGGGCGGTATCCAATGCGTGGTCTATATCAAGCACTTGCAG
                                                        | |   |   || ||  ||  |   | ||   | ||  ||   | | |  ||   || | |   |    ||    | ||   |||  ||      |||||   | |||||  ||||| ||||||| || || || |||||||||  ||||||||||||   |||||| ||||||||||||||||| || || || ||||| || ||||
-------------------------------------------------------agaggagtggggttattcaggaatgatatgcagtgtgtgaataccgtgtgatggagtggagtacgtgacaggc---cggtggattggggg------cttggtggtgcagGCCCGGCCGCTGTTCAAGGACCGAAGGAAGTTTCCGTCGATGGCGGATCCGATGCTGCAGGGGCGGTATCCAATGCGCGGGCTGTACCAAGCCCTGGCAG